Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d21
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   2.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   4.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    24   4.9  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    23   8.5  

>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 108 TGYTKTIIVIILCVGASSHSNRGYHIL 28
           TGYT  + + ++CV ++     GY  L
Sbjct: 31  TGYTVWVFIALICVDSNIKIRNGYRNL 57


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 283 FFSSITLFINHSYCYWY 233
           + SS+  +IN S C WY
Sbjct: 243 YLSSMKAYINSSGCLWY 259


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 277 SSITLFINHSYCYWY*IHRDMKNEILNIINIKTY 176
           +S+T     +   WY  H +++ ++L +I + TY
Sbjct: 199 ASLTFNGEEAISQWYFFHFNLQLQLLRVIFLSTY 232


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -1

Query: 286 FFFSSI--TLFINHSYCYWY 233
           +FFS    TLF N+ Y +WY
Sbjct: 457 WFFSKSEGTLFANNFYYFWY 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,120
Number of Sequences: 5004
Number of extensions: 17552
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)