Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d21
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684...    27   1.8  
05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712...    27   3.1  
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518...    26   4.1  

>07_03_0276 +
           16166528-16166796,16166824-16167291,16168048-16168414,
           16168565-16168587,16170094-16170385
          Length = 472

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 97  KNHNRYNFMCRSEQSFKQRLSHTTI 23
           K++NRY F C SE++ K++ + ++I
Sbjct: 102 KDYNRYEFACYSERTSKEQNAKSSI 126


>05_03_0482 -
           14568108-14568284,14568912-14569970,14570532-14571236,
           14571376-14571656,14571748-14571769
          Length = 747

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 106 RLHKNHNRYNFMCRSEQSFKQ 44
           ++ K +NRY F C SE+S ++
Sbjct: 214 QITKQYNRYEFACHSERSSRE 234


>05_04_0275 -
           19650555-19650625,19650927-19651221,19651593-19651895,
           19651978-19652182,19652266-19652501,19652619-19652816,
           19653785-19653907,19654227-19654514,19654618-19654794,
           19655580-19655915,19656753-19656863,19656977-19657227,
           19657431-19657566
          Length = 909

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 159 YDQHDIITVSFKKNYVHTGYTKTIIVIILCVGASSHSNR 43
           +D H I     +K  VH+G+ +T I    C+   S   R
Sbjct: 393 FDDHVIPKFGLQKGGVHSGHVQTGITDSFCLAKESKKGR 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,532,666
Number of Sequences: 37544
Number of extensions: 81285
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)