Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4d21
(286 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 29 0.71
X53156-1|CAA37312.1| 356|Caenorhabditis elegans G-protein a-2 p... 27 1.6
U41996-6|AAA83475.1| 356|Caenorhabditis elegans G protein, alph... 27 1.6
AY008125-1|AAG32078.1| 356|Caenorhabditis elegans heterotrimeri... 27 1.6
AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical ... 27 2.9
Z78412-3|CAB01651.2| 236|Caenorhabditis elegans Hypothetical pr... 25 6.6
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 25 8.7
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 25 8.7
U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned expre... 25 8.7
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 25 8.7
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 168 FFFYDQHDIITVSFKKNYVHTGYTKTIIVIILCVGASSHS 49
FF+ +++ S NYV GY I C+ A+SHS
Sbjct: 278 FFYLSSFILVSASSYLNYV-IGYGSVFISFFYCIVATSHS 316
>X53156-1|CAA37312.1| 356|Caenorhabditis elegans G-protein a-2
protein.
Length = 356
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 115 IIFLKANSNYVMLIIEEEKTNKF*C*LYLKFHFSYLCEFNTSNNKND**IMLYLKKK 285
IIF+ A S Y ++ E+E TN+ + L F +C +N N I+L+L KK
Sbjct: 224 IIFIAALSEYNEVLFEDETTNRMIESMRL---FESICNSRWFHNTN---IILFLNKK 274
>U41996-6|AAA83475.1| 356|Caenorhabditis elegans G protein, alpha
subunit protein 2 protein.
Length = 356
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 115 IIFLKANSNYVMLIIEEEKTNKF*C*LYLKFHFSYLCEFNTSNNKND**IMLYLKKK 285
IIF+ A S Y ++ E+E TN+ + L F +C +N N I+L+L KK
Sbjct: 224 IIFIAALSEYNEVLFEDETTNRMIESMRL---FESICNSRWFHNTN---IILFLNKK 274
>AY008125-1|AAG32078.1| 356|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 356
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 115 IIFLKANSNYVMLIIEEEKTNKF*C*LYLKFHFSYLCEFNTSNNKND**IMLYLKKK 285
IIF+ A S Y ++ E+E TN+ + L F +C +N N I+L+L KK
Sbjct: 224 IIFIAALSEYNEVLFEDETTNRMIESMRL---FESICNSRWFHNTN---IILFLNKK 274
>AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical
protein Y119C1B.5 protein.
Length = 754
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 111 HTGYTKTIIVIILCV 67
H+GYT+ + V+ILC+
Sbjct: 379 HSGYTEAVSVVILCI 393
>Z78412-3|CAB01651.2| 236|Caenorhabditis elegans Hypothetical
protein M176.4 protein.
Length = 236
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 192 LTLKLIGFFFFYDQHDIITVSFKKNYVHTGYTKTIIVIILCVGASSHSNRGYHIL 28
L + IGFF FY ++ +S HTGY K + CV S++ + Y IL
Sbjct: 174 LLYRAIGFFLFYISDSVLMLS------HTGYWK--LAPSFCV-LSTYYSAQYFIL 219
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 132 SFKKNYVHTGYTKT 91
+ KKN H GYTKT
Sbjct: 562 TMKKNVAHAGYTKT 575
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 132 SFKKNYVHTGYTKT 91
+ KKN H GYTKT
Sbjct: 562 TMKKNVAHAGYTKT 575
>U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned
expression site protein 8 protein.
Length = 467
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 159 YDQHDII---TVSFKKNYVHTGYTKTI 88
YDQ ++ T S ++ +H GYT+T+
Sbjct: 301 YDQGSVMAGGTYSLREGMIHEGYTRTL 327
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 132 SFKKNYVHTGYTKT 91
+ KKN H GYTKT
Sbjct: 562 TMKKNVAHAGYTKT 575
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,623,442
Number of Sequences: 27780
Number of extensions: 98350
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -