Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d21
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   2.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   6.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   6.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   6.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   9.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -1

Query: 250 SYCYWY*IHR-DMKNEI---LNIINIKTYWFFL 164
           +Y  WY  H  +++N++   +  I + TY+FFL
Sbjct: 204 NYSGWYLNHDYNLENKLNYFIEDIGLNTYYFFL 236


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 84  RLWFLCSLYVH 116
           R+WFL +L VH
Sbjct: 10  RVWFLSALVVH 20


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 84  RLWFLCSLYVH 116
           R+WFL +L VH
Sbjct: 10  RVWFLSALVVH 20


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 109 YRLHKNHNRYNFMCR 65
           Y+ + N+N YN  C+
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 109 YRLHKNHNRYNFMCR 65
           Y+ + N+N YN  C+
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 109 YRLHKNHNRYNFMCR 65
           Y+ + N+N YN  C+
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 109 YRLHKNHNRYNFMCR 65
           Y+ + N+N YN  C+
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 286 FFFSSITLFINHSYCYW 236
           FFF++ +L +    CY+
Sbjct: 150 FFFAATSLLVVAEVCYF 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,097
Number of Sequences: 438
Number of extensions: 1376
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)