Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d19
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    30   0.36 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    28   1.4  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    27   1.9  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   3.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   4.4  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   5.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.7  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   7.7  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +1

Query: 127 NNQTKSKGQIINNSLSNNYQMSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKY 306
           N+ +  K +   ++L+N   +   I  + E    G  P WDE+++AL F   Q     K 
Sbjct: 492 NSISTRKEEDAASALANLSAVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK- 550

Query: 307 VPTTEKHTKTSLDGRVGFIL 366
           +P T +   T    R  F L
Sbjct: 551 MPLTPRRASTGPRPRPTFQL 570


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 449 LPSSPSHCMKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 336
           LPS PS       R TP T  +++P  G M    P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 545 LLELWVMKILQVTLRETKPLFTNWIQLKMGN*RRLSKLCHYQTA 676
           LL LW + +    L +T+PL T  +  K G  R  + +C Y  A
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVA 146


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 580 NFERNKASLYKLDSAKDGKLEKIIETVSLSNGL 678
           N E  K  + K     +G L+  +ET++L NGL
Sbjct: 74  NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 579 TWRIFMTHSSSKQPPTRICFA 517
           T+R F T SS+K P   +CFA
Sbjct: 21  TFRKFTTESSTKSPIADVCFA 41


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 434  SHCMKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 333
            SH    N  + + P  N S VP+TGN+K  L    V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 541  LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKIIETVSLS 669
            L    +G E+P   PGNF  +  SLY++  +  G+     E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 338 LVFVCFSVVGTYLCIVLSWMLTKYS 264
           ++F C  V+   L ++LSW  T+YS
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYS 272


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 266 YTL*ASKIKLYTNMYQLLKNI 328
           Y + A+K K +T  YQLLKNI
Sbjct: 717 YHVSATKKKEFTRQYQLLKNI 737


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 169 LSNNYQMSVRIEKITEPLTLGEGPHWDERQ-QALYFVSIQDKTIHKYVPTTEKHTKTSLD 345
           L   Y M  R+ +   P  L      D  Q  A+   +I+ K + K V  + K  K SL+
Sbjct: 269 LEKGYMMLFRLVRDRSPYFL------DSLQLHAINLSAIKSKHLQKIVVLSSKG-KVSLE 321

Query: 346 GRVGFILPVEGTTDQFVV 399
             +   LP+EGT   F V
Sbjct: 322 SPMSPSLPIEGTFRSFRV 339


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 NNSLSNNYQMSVRIEKITEPLTLGEGP 240
           NN++++  + SV  E+  EPL  GE P
Sbjct: 62  NNAINSEAEKSVSEEEQDEPLVEGESP 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,938
Number of Sequences: 5004
Number of extensions: 58324
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)