Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d18
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    29   3.3  
U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL022288-2|CAA18370.1|  338|Caenorhabditis elegans Hypothetical ...    29   4.3  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain (p...    28   5.7  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    28   5.7  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   7.6  

>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 441 HLDTFDLPHATVTITSIARFHATFANYETK-NILNGRSEYNFYKQHEHL 584
           H   F  P+A V+ +S  + H  FAN  T  N+ N +S  NF    +H+
Sbjct: 107 HESPFSHPNADVSPSSPQQLHLAFANATTSTNVTNAKSTTNFDGYLKHI 155


>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 421 RAIVLGTTWIPSTYHTRQSPLRPSLVST 504
           RA++LG T++P ++H R    +P +  T
Sbjct: 146 RAVILGVTFLPPSFHNRDEICQPQVNRT 173


>U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical
           protein F47C12.4 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +3

Query: 366 VKAYLYSDSMLVLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFHATFANYETKN---- 533
           +K Y+Y+      PD D     ++   +T+ L  + + ++ I + +    N +T      
Sbjct: 279 LKPYMYTKESHFFPDPDSMEQLAKLEPETYSLMRSPL-VSEIDQSYRNRHNCQTPGAHYE 337

Query: 534 -ILNGRSEYNFYKQHEHLLNEPT 599
            +L G+   NF  +H+ +  +PT
Sbjct: 338 VVLGGKKTANFVVEHDKIKGKPT 360


>AL022288-2|CAA18370.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK1025.3 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +3

Query: 510 FANYETKNILNGRSEYNFYK------QHEHLLNEPTFKDCPWLRAAAKCISDILNTFSAK 671
           ++NY  K  L   +E N +K      +H+   N  ++K  P   A   C+   L     K
Sbjct: 38  YSNYNDKKPLKEENELNVFKWAPPPVRHDTARNLTSYKSSPLFDAYYNCVYPKLRPLKGK 97

Query: 672 YV 677
           YV
Sbjct: 98  YV 99


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 30  NNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPV--ADGIAGFLGDHFKV 185
           ++LR+++ D++ E  + + +  ++GE  + + GY++ +   D +  +   HF +
Sbjct: 541 SDLRASMKDLYFENTIDEFIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594


>U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 8 protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 581 LIKRTHF*GLPLASCGRKMYFR--HPKH 658
           LI   H  G  L  CG K+YF   HPKH
Sbjct: 706 LINHRHTIGTVLTLCGWKLYFSIYHPKH 733


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 30  NNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPV--ADGIAGFLGDHFKV 185
           ++LR+++ D++ E  + + +  ++GE  + + GY++ +   D +  +   HF +
Sbjct: 541 SDLRASMKDLYFENTIDEFIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = +3

Query: 366 VKAYLYSDSMLVLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFHATF-----ANYETK 530
           +K Y+YS      PD D     ++   + + L  + +   S+ R+         +N   +
Sbjct: 280 LKPYMYSKESQFFPDPDSMEQLAKLEPEAYSLMRSPLVSNSVERYRTNRYCQAPSNPHYE 339

Query: 531 NILNGRSEYNFYKQHEHLLNEPT 599
            +L G+   NF  +   +  +PT
Sbjct: 340 VVLGGKKTANFVVEENKIKGKPT 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,162
Number of Sequences: 27780
Number of extensions: 312422
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)