Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d14
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P04148 Cluster: Fibrohexamerin precursor; n=2; Bombyx|R...   438   e-122
UniRef50_O62605 Cluster: Fibrohexamerin precursor; n=2; Obtectom...   221   2e-56
UniRef50_Q9BLL4 Cluster: Fibroin P25; n=1; Papilio xuthus|Rep: F...   210   2e-53
UniRef50_Q14UU6 Cluster: Low molecular weight silk protein; n=1;...   167   2e-40
UniRef50_A5E451 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A6PSV5 Cluster: Membrane bound regulatory protein, puta...    35   2.1  
UniRef50_Q1ATV3 Cluster: Fumarylacetoacetate (FAA) hydrolase; n=...    33   6.3  

>UniRef50_P04148 Cluster: Fibrohexamerin precursor; n=2; Bombyx|Rep:
           Fibrohexamerin precursor - Bombyx mori (Silk moth)
          Length = 220

 Score =  438 bits (1079), Expect = e-122
 Identities = 197/199 (98%), Positives = 198/199 (99%)
 Frame = +3

Query: 75  GPPSPIYRPCYLDDYKCISDHLAAISKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNL 254
           GPPSPIYRPCYLDDYKCISDHLAA SKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNL
Sbjct: 18  GPPSPIYRPCYLDDYKCISDHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNL 77

Query: 255 ITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYP 434
           ITRNHD+CRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYP
Sbjct: 78  ITRNHDQCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYP 137

Query: 435 LIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHI 614
           LIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHI
Sbjct: 138 LIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHI 197

Query: 615 FGKRNWLARSFISRTLCDF 671
           FGKRNWLARSFISRTLCDF
Sbjct: 198 FGKRNWLARSFISRTLCDF 216


>UniRef50_O62605 Cluster: Fibrohexamerin precursor; n=2;
           Obtectomera|Rep: Fibrohexamerin precursor - Galleria
           mellonella (Wax moth)
          Length = 218

 Score =  221 bits (539), Expect = 2e-56
 Identities = 105/200 (52%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
 Frame = +3

Query: 75  GPPSPIYRPCYLDDYKCISDHLAAISKCIPG-RGQIPSQYEIPVFQFEIPYFNATYVDHN 251
           GP + + RPC LDD KCI D+++A S C    RG IPS+Y IP F FE P+FNA+Y+D+N
Sbjct: 17  GPANNVVRPCRLDDLKCIRDNISANSNCNANVRGSIPSEYVIPRFNFETPFFNASYIDNN 76

Query: 252 LITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSY 431
           LI RN+D CRVSEF+ NV+   +VL VDCP L+ ES+RTL QH S +E+   +++I G Y
Sbjct: 77  LIIRNNDACRVSEFFFNVKADTSVLAVDCPNLDLESDRTLIQHASLQEETTYNYHIRGIY 136

Query: 432 PLIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREH 611
           PLIRLTT     +  +LC+AFT+AD+   LPIF I+P D+ TA +LS+DL+LL+IYERE 
Sbjct: 137 PLIRLTTNLLNADRLNLCNAFTYADVT-ALPIFKIDPKDRPTANFLSRDLSLLNIYERET 195

Query: 612 IFGKRNWLARSFISRTLCDF 671
              +   L R F++  +CDF
Sbjct: 196 FAYRPPQLIRQFVNSLICDF 215


>UniRef50_Q9BLL4 Cluster: Fibroin P25; n=1; Papilio xuthus|Rep:
           Fibroin P25 - Papilio xuthus
          Length = 215

 Score =  210 bits (513), Expect = 2e-53
 Identities = 98/195 (50%), Positives = 136/195 (69%), Gaps = 1/195 (0%)
 Frame = +3

Query: 90  IYRPCYLDDYKCISDHLAAISKCIPG-RGQIPSQYEIPVFQFEIPYFNATYVDHNLITRN 266
           + RPC L D  CI  +LAA S+C P   G+IP++Y +    F  PYFNATY+D+NL+  N
Sbjct: 18  VVRPCALSDLACIGRNLAANSRCNPNVPGRIPARYTVQSLPFHAPYFNATYIDYNLVVSN 77

Query: 267 HDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRL 446
           H++CRVSEF+ N+ +   VL++DCP L+FESNR   QH S +ED   S+ I G+YPLIRL
Sbjct: 78  HNRCRVSEFFINLSSKTAVLSLDCPNLDFESNRLTIQHASLQEDRQFSYTIQGTYPLIRL 137

Query: 447 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 626
           TT     N  +LCS+ TFAD+   LP F +NPN+++TA +LS+DLTLL+I+ERE  F + 
Sbjct: 138 TTNLHASNGLNLCSSLTFADVV-ALPKFRLNPNNKQTANYLSRDLTLLNIFERECFFWRA 196

Query: 627 NWLARSFISRTLCDF 671
           + LAR FI+  +C++
Sbjct: 197 SLLARYFINSLICNY 211


>UniRef50_Q14UU6 Cluster: Low molecular weight silk protein; n=1;
           Yponomeuta evonymellus|Rep: Low molecular weight silk
           protein - Yponomeuta evonymella (Bird-cherry ermine
           moth)
          Length = 217

 Score =  167 bits (407), Expect = 2e-40
 Identities = 77/194 (39%), Positives = 123/194 (63%)
 Frame = +3

Query: 90  IYRPCYLDDYKCISDHLAAISKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNLITRNH 269
           I RPC+L D +CI D+LAA S C            +  F+FE P+F+++Y+++NLI RN 
Sbjct: 20  IVRPCHLQDLECIQDNLAANSHCKTNIAGTAPTATVSNFRFECPFFHSSYIENNLIMRNV 79

Query: 270 DKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLT 449
           D C VSEF+ N+ T K +L++DC     E++RT+ QH S  ED V  ++IN +YP++RLT
Sbjct: 80  DSCVVSEFFFNMDTDKALLSIDCLDFGLEADRTVLQHRSLHEDSVYQYHINSTYPILRLT 139

Query: 450 TVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKRN 629
           T  +  +  + CS +TF ++   LPIFHI+P D+ T+++L++D++ L  +ERE    + +
Sbjct: 140 TNMNNADRINFCSEYTFVEIP-VLPIFHIDPKDKLTSKFLTRDMSELFAFERETFNYRGS 198

Query: 630 WLARSFISRTLCDF 671
            +   F+   +CDF
Sbjct: 199 GIMNWFLQHKICDF 212


>UniRef50_A5E451 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 793

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 495 TFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKRNWLARSFIS 653
           TF+D     P  HIN    R +    K L +L  Y  EH FG R W+ ++++S
Sbjct: 138 TFSDFIASNP--HINTESPRFSLESEKTLIILSPYSPEHAFG-RKWVTKTYLS 187


>UniRef50_A6PSV5 Cluster: Membrane bound regulatory protein,
           putative; n=1; Victivallis vadensis ATCC BAA-548|Rep:
           Membrane bound regulatory protein, putative -
           Victivallis vadensis ATCC BAA-548
          Length = 345

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -1

Query: 319 VFKVLTLS*NSLTRHLSWLRVMRLWST*VA-----LKYGISNWNTGISYCEGICPLPGIH 155
           VF VLT    SL++   WLRV   W   VA     +   +S W     YC  +CP  G  
Sbjct: 190 VFGVLTHCYLSLSQFNGWLRVTPHWKFSVASLVFLISVLLSIWKGRNFYCGSVCPYGGAQ 249

Query: 154 FEIAARWSE 128
            E+AAR+ +
Sbjct: 250 -ELAARFGK 257


>UniRef50_Q1ATV3 Cluster: Fumarylacetoacetate (FAA) hydrolase; n=3;
           Actinobacteria (class)|Rep: Fumarylacetoacetate (FAA)
           hydrolase - Rubrobacter xylanophilus (strain DSM 9941 /
           NBRC 16129)
          Length = 320

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 96  RPCYLDDYKCISDHLAAISKCIPGRGQIPSQ-YEIPVFQFEIPY 224
           +P  L D+    +H+  I++ +   G +P   YEIP F F  PY
Sbjct: 65  QPPTLRDFVVFEEHVEGITRSVSEEGGVPEAWYEIPTFYFGNPY 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,266,242
Number of Sequences: 1657284
Number of extensions: 14451847
Number of successful extensions: 40456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40426
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)