Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d14
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    29   0.46 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    29   0.81 
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    28   1.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.5  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   7.5  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   7.5  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    25   9.9  

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 246 HNLITRNHDKCRVSEFYDNVRTLKTVLTVD-CPWLNFESNRTLAQHM 383
           + L+   H KC   ++Y+   T    + +D C    FE+N++L+QHM
Sbjct: 33  NRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHM 79


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 260 GNEIMVDVGGVEVWYFKLEHRYLVLR 183
           G+E++V   G EVW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +3

Query: 132 DHLAAISKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNLITRNHDKCRVSEFY--DNV 305
           + + + +K I   G   S Y + +FQ + P F    +        HD C VS  Y  D  
Sbjct: 186 ERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIA 245

Query: 306 RTL-KTVLTVDCPWLNFESNRTLAQHMSFKE 395
             L + +L  D   L F      AQ  S +E
Sbjct: 246 HALDRDILERDEIVLQFPYTEAAAQEKSQEE 276


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 456  FDKGNNFDLCSAFTFADLAGGLPIFHI---NPNDQRTAQWLSKDLTLLHIYEREHIFG 620
            F+  N+F+  +  T +  +G +  F +   +PND    QWL K  T + I E+  +FG
Sbjct: 837  FEVNNSFNASNVNTNSSFSGPISEFLVELFSPNDDAKQQWLPKK-TYISILEQ--LFG 891


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +3

Query: 447 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 626
           T +F  G    L   +    L G +PI   +P      + L+ D  ++H+Y +  +  K 
Sbjct: 208 TNIFSSGGGLTLSEKYKLPFL-GSVPI---DPKFGEMIENLTPDSNIVHLYSKTEMSKKF 263

Query: 627 NWLARSFISR 656
           +++   F+++
Sbjct: 264 SFITNEFLNQ 273


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 183 SQYEIPVFQFEIPYFN--ATYVDHNLITRNHDKCRVSEF 293
           S Y + + +F    F+  +T  D NL +RN DK  +  F
Sbjct: 209 SNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYF 247


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 279 RVSEFYDNVRTLKTVL-TVDC 338
           R+SE Y+ +R + TVL T+DC
Sbjct: 690 RISEHYNELRNVTTVLGTLDC 710


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 395 FLERHVLSQGPIGFKVQPRTVHG 327
           F+ERH+++  PI +  + +T+ G
Sbjct: 122 FVERHIITSSPIEWNNEYKTIDG 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,159
Number of Sequences: 5004
Number of extensions: 56435
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)