Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d11
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    31   0.15 
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   4.2  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   5.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.5  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = -2

Query: 471 ISDVDIINPLTKAN*VL*SKLSNYSAKYHQYIVRRL 364
           IS++D+ N L+ A  V+  KLSNY  + H Y+V+++
Sbjct: 259 ISEIDLENILSFAERVI--KLSNYRKQLHNYLVQKM 292


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 43  NIIYGYQLMPYSLSLGRRLQVEE 111
           +I  G+  + YSL LGRR+ V+E
Sbjct: 193 HISSGFAALAYSLCLGRRIVVDE 215


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
 Frame = +3

Query: 6   TSYLPKLS--PNKFQYYLWLPTNALLFVA--------WTEATGRGGLPYS*YYKDQMERA 155
           +SY  KL   PN+ Q Y+W   +  +F A        +   T R  LP    YK    R 
Sbjct: 327 SSYQTKLCILPNQIQIYVWYGASISIFFALILLRTAIFFFGTDRYSLP---LYKTHARRF 383

Query: 156 KLSMNLTVINFISKYCYTKFIYY 224
            LS  + +   I +   + FI Y
Sbjct: 384 SLSTTIHLFKKIVRITLSTFISY 406


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 135  KDQMERAK-LSMNLTVINFISKYCYTKFIYYYLKIDKL*RYSNFWLFQTKLMLFTSTLQF 311
            K Q+ R + L + + ++  ++   + + IYY        RY +FW F+     FT+   +
Sbjct: 3426 KKQIFRQRALQLRMQLLETLNSSVFPESIYYDYFYKTFERYCDFWFFR---RTFTTQYAY 3482

Query: 312  IHIYYFCF 335
            + I  + F
Sbjct: 3483 MIIMTYVF 3490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,333
Number of Sequences: 5004
Number of extensions: 36136
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)