Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d11
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   6.2  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 NFWLFQTKLMLFTSTLQFIHIYYF 329
           +F++F +   +F + +QF  ++YF
Sbjct: 277 DFFVFLSFAFIFATIIQFAVVHYF 300


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 6   TSYLPKLSPNKFQYYLWLP 62
           T YL  + P+  QY+ +LP
Sbjct: 317 TCYLSHVDPDVVQYFGYLP 335


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein
          protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 6  TSYLPKLSPNKFQYYLWLP 62
          T YL  + P+  QY+ +LP
Sbjct: 23 TCYLSHVDPDVVQYFGYLP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,257
Number of Sequences: 438
Number of extensions: 2256
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)