Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4d07
(608 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81788-1|CAA57387.1| 206|Homo sapiens ICT1 protein protein. 118 2e-26
BT007111-1|AAP35775.1| 206|Homo sapiens immature colon carcinom... 118 2e-26
BC015335-1|AAH15335.1| 206|Homo sapiens immature colon carcinom... 118 2e-26
AK222553-1|BAD96273.1| 206|Homo sapiens immature colon carcinom... 117 4e-26
BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sortin... 31 2.4
AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens ... 31 2.4
AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sortin... 31 2.4
AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sortin... 31 2.4
Y00318-3|CAA68418.1| 244|Homo sapiens protein ( Human mRNA for ... 31 4.2
Y00318-1|CAA68416.1| 565|Homo sapiens protein ( Human mRNA for ... 31 4.2
J02770-1|AAA52455.1| 583|Homo sapiens IF protein. 31 4.2
>X81788-1|CAA57387.1| 206|Homo sapiens ICT1 protein protein.
Length = 206
Score = 118 bits (284), Expect = 2e-26
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +3
Query: 198 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 377
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVNKV++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97
Query: 378 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 557
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 558 IRDAEVTKREPSPE 599
I +A T +EP+ E
Sbjct: 158 ITEASQTPKEPTKE 171
>BT007111-1|AAP35775.1| 206|Homo sapiens immature colon carcinoma
transcript 1 protein.
Length = 206
Score = 118 bits (284), Expect = 2e-26
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +3
Query: 198 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 377
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVNKV++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97
Query: 378 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 557
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 558 IRDAEVTKREPSPE 599
I +A T +EP+ E
Sbjct: 158 ITEASQTPKEPTKE 171
>BC015335-1|AAH15335.1| 206|Homo sapiens immature colon carcinoma
transcript 1 protein.
Length = 206
Score = 118 bits (284), Expect = 2e-26
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +3
Query: 198 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 377
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVNKV++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97
Query: 378 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 557
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 558 IRDAEVTKREPSPE 599
I +A T +EP+ E
Sbjct: 158 ITEASQTPKEPTKE 171
>AK222553-1|BAD96273.1| 206|Homo sapiens immature colon carcinoma
transcript 1 variant protein.
Length = 206
Score = 117 bits (281), Expect = 4e-26
Identities = 58/134 (43%), Positives = 88/134 (65%)
Frame = +3
Query: 198 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 377
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVN+V++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNRVNS 97
Query: 378 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 557
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 558 IRDAEVTKREPSPE 599
I +A T +EP+ E
Sbjct: 158 ITEASQTPKEPTKE 171
>BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sorting
33 homolog B (yeast) protein.
Length = 617
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 181 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 71
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
Length = 617
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 181 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 71
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sorting
protein 33B protein.
Length = 617
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 181 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 71
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sorting
33B protein.
Length = 617
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 181 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 71
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>Y00318-3|CAA68418.1| 244|Homo sapiens protein ( Human mRNA for
complement control protein factor I. ).
Length = 244
Score = 30.7 bits (66), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 411 DWIHPDIRQRMLELYDKKLTKEGY 482
DWIHPD+++ ++E D+ + E Y
Sbjct: 59 DWIHPDLKRIVIEYVDRIIFHENY 82
>Y00318-1|CAA68416.1| 565|Homo sapiens protein ( Human mRNA for
complement control protein factor I. ).
Length = 565
Score = 30.7 bits (66), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 411 DWIHPDIRQRMLELYDKKLTKEGY 482
DWIHPD+++ ++E D+ + E Y
Sbjct: 380 DWIHPDLKRIVIEYVDRIIFHENY 403
>J02770-1|AAA52455.1| 583|Homo sapiens IF protein.
Length = 583
Score = 30.7 bits (66), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 411 DWIHPDIRQRMLELYDKKLTKEGY 482
DWIHPD+++ ++E D+ + E Y
Sbjct: 398 DWIHPDLKRIVIEYVDRIIFHENY 421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,778,291
Number of Sequences: 237096
Number of extensions: 1476800
Number of successful extensions: 2805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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