Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d06
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   0.79 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   5.6  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    22   9.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    22   9.7  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    22   9.7  

>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 145 IPIYKQTTST*LQFSVNNGCRTNAWKL 65
           +P+Y  T    + F +  GC  N W L
Sbjct: 174 LPLYSVTLVIFVVFQIGGGCSKNIWSL 200


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 83  STAIVH*ELQSRRGCLFVNRNNY*HYKPNNK 175
           ST  +  E+    G +F  ++NY +Y PN +
Sbjct: 502 STHSMKQEIAKSIGTIFPTKDNYVYYLPNKE 532


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 119 YVTAVLSEQWLSN 81
           YV+ +LS  WLSN
Sbjct: 759 YVSELLSNSWLSN 771


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 63  DNFHAFVRQPLFTENCSHVEV 125
           D F  F   PLF E C   E+
Sbjct: 123 DRFAQFFIDPLFLEECKDREI 143


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 100 VNNGCRTNAWKLSKRQHQLL 41
           V+  C TN  KL+KR+ Q L
Sbjct: 120 VDGFCETNLGKLTKREGQPL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,209
Number of Sequences: 5004
Number of extensions: 9497
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)