Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d06
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0476 + 14499226-14499381,14499726-14499750,14500388-145007...    26   4.9  
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890...    25   8.5  

>05_03_0476 +
           14499226-14499381,14499726-14499750,14500388-14500734,
           14501608-14501886
          Length = 268

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 122 LYVTAVLSEQWLSNKRVEVIEAATSV 45
           +Y   +L  +WLSN+ V +   ATS+
Sbjct: 58  IYKEMILLARWLSNQYVAISRTATSI 83


>07_01_1029 -
           8902771-8902805,8903135-8903256,8904097-8904425,
           8905435-8905530,8906126-8906257,8907244-8907348,
           8907630-8907803,8908094-8908163,8908263-8908444,
           8908669-8908778,8909778-8909882,8909965-8910043,
           8910342-8910382,8910511-8910589,8910856-8910966
          Length = 589

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 95  QWLSNKRVEVIEAATSVITQWLGGSR 18
           +WL N     I  A S+I   +GGSR
Sbjct: 361 KWLRNLMTRTIAIAPSLIVSIIGGSR 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,623,115
Number of Sequences: 37544
Number of extensions: 60323
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)