Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d06
         (195 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical p...    27   2.4  
Z67756-3|CAA91764.3|  377|Caenorhabditis elegans Hypothetical pr...    25   5.6  

>U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK1290.9 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 100 VNNGCRTNAWKLSKRQHQLLLN 35
           V+NGC+ + WK S    +++LN
Sbjct: 141 VDNGCQVDQWKSSSGYKKIILN 162


>Z67756-3|CAA91764.3|  377|Caenorhabditis elegans Hypothetical
           protein R07A4.4 protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 134 VNRNNY*HYKPN-NKVFVEK 190
           +N N Y  YKPN N +++EK
Sbjct: 102 INPNGYLEYKPNQNVIYIEK 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,358
Number of Sequences: 27780
Number of extensions: 57669
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)