Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d06
         (195 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   0.76 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   1.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   4.1  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    18   9.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    18   9.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 0.76
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 78  FVRQPLFTENCSHVEVVC 131
           +VR+  F+E+C   E++C
Sbjct: 426 YVREIAFSESCLPEEILC 443


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 138 FTNKQPLRDCSSQ*TMAVEQTRGSYRSGNISYYSMVRGFPA 16
           FT+K   R  + +   A+ Q +G+  S    +YS+   +PA
Sbjct: 402 FTSKGEYRMSTGEMKEAITQWQGNPISPLNDWYSLASSWPA 442


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 137 NRNNY*HYKPNN 172
           N NNY +Y  NN
Sbjct: 97  NNNNYNNYNYNN 108


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 106 FSVNNGCRTNAWKLSKRQHQL 44
           FS    CR ++  L  + HQ+
Sbjct: 142 FSTGERCRISSNFLPNKMHQV 162


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 119 YVTAVLSEQWLSNK 78
           Y+T  +SE W+  +
Sbjct: 339 YLTKFVSEYWMETR 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,273
Number of Sequences: 438
Number of extensions: 698
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)