Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d05
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    97   2e-21
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.47 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.47 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   4.4  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   5.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   7.7  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
 Frame = +2

Query: 215 RLPERYGAGEKSVWVEYIQLAAEYK-PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLH 391
           R   +  A    VW    Q  AE K P V+L QGF +Y+ PK V +A  +  + +    +
Sbjct: 7   RPSNKVAASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKK--SIDEVACN 64

Query: 392 QYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIII 571
           QY+   G P L + LS+ YSP   R ++   EI+VT+GA E  +S     ++ GDEVI++
Sbjct: 65  QYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTAGANEGFFSVFAAFLNPGDEVIVM 124

Query: 572 EPYFDCYDFMVKCAGGVPRFIALKPKPQG 658
           EP+FD Y   +   GGVP ++ + P  +G
Sbjct: 125 EPFFDQYISNITMNGGVPVYVPIIPPEEG 153


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 479 FNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFI-ALKPKP 652
           F ++   S    A Y  +L H D  + +I+I+P    + F  +  GGVP  + A+  KP
Sbjct: 583 FLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSF--EHPGGVPVLLDAVSVKP 639


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 323 YHAPKHVTEALSQIATSENP-LLHQYTRGFGLPRLVENLSKVYSPLIGRQ 469
           Y  P  +T+ L  I +SEN  L+HQ  R  GLP+ +E    +Y+P   RQ
Sbjct: 604 YWDPFMITD-LKFIGSSENAELIHQRLRN-GLPKSIEKGPFIYNPFNRRQ 651


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 383 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTS 502
           LL    RG G  R  E+L K   PL+   ++AFN +L+++
Sbjct: 720 LLRALFRGIGGGRF-ESLYKEVMPLLHALLEAFNSLLISA 758


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 422 LVENLSKVYSPL--IGRQIDAFNEILVTSGAYEALYSTILGHVDTG--DEVIIIEPYFDC 589
           ++E + K  S L  + ++ID   + L    A++ LYS +L  V  G  D + ++E   +C
Sbjct: 536 VIEIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYAGDTDSIDVLEDIDNC 595

Query: 590 Y 592
           Y
Sbjct: 596 Y 596


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 419 RLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 559
           R++ N++K +   I   +D FNE+       + L +   GHVD  DE
Sbjct: 74  RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDE 120


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 356 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEIL 493
           S + T  N L    T  FG   L   +  V + L+ R+I+ F E+L
Sbjct: 460 STLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEEVL 505


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 142 SIEECENRTFYSTIECLSYNGRKVSI 219
           SIEEC     Y+  + L Y G +V +
Sbjct: 294 SIEECAKLNIYTAQQALEYIGARVKV 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,932
Number of Sequences: 5004
Number of extensions: 58734
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)