Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d02
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   1.9  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   3.4  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.9  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   5.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.8  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   7.8  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = +3

Query: 150 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 329
           C+ +      Y   +GK YC   +    F  RC  C G   + F      Y NG  Q W 
Sbjct: 209 CYTVFGPNDSYYEYEGKVYCHYHY-STLFAARCCGCDGPILRQF---VEVYRNGVSQNWH 264

Query: 330 GKCQQCYDSYGNFVCR 377
             C   Y  +   +C+
Sbjct: 265 VPCHMIYKFWNVKLCQ 280


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 74  FTISKLIFEQCHILYLTDS 18
           FT++KL+  QCH L+L  S
Sbjct: 309 FTLAKLVATQCHRLWLVQS 327


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 303  GNGTLQCWQGKCQQCYDSYGNFVCRDGIDQILLISTTQI-VMGSA 434
            G+GT    Q +   C D   ++VCRD    I ++ST  +  +GSA
Sbjct: 1119 GHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSA 1163


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 268 EKNASALVVIDMEMAHFNVGKENVNN 345
           +K+  + +++D+E A  N  +EN+NN
Sbjct: 325 KKSKGSALMVDIEAADINKTEENINN 350


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +3

Query: 99  CFFVFACAESVSDYEEQCFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKC 278
           C  +  C E     +++C +  C G  +E I  KCYC         H +  PC  L    
Sbjct: 342 CDELLPCGEHTC--KKRCHSGLC-GACFEPINAKCYCG-------LHSKTYPCSSLPSPS 391

Query: 279 FGPCCNRYGNGTLQCWQG 332
                 +  NG+++ W G
Sbjct: 392 IS---KKDENGSVKEWFG 406


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 48   FENKF*NRKMQKWITFACFFVFACAESVSDYEEQCFA 158
            F++ F    +   I  + F     +E+VSDY ++C A
Sbjct: 1530 FQSSFQTANLPGLINISAFLPEFTSEAVSDYTKECIA 1566


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 383 HRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHR 499
           HR   AD  D+N   +   +R  S+I++ LQI   DY +
Sbjct: 133 HRAFKADVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,378
Number of Sequences: 5004
Number of extensions: 73976
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)