Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4d02
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0799 + 27809301-27811550 35 0.054
08_02_0168 - 13640894-13641973 34 0.12
12_02_0528 + 20059613-20061472 33 0.22
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 32 0.50
05_01_0212 + 1601861-1603600 31 0.66
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 31 1.2
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 30 2.0
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 29 2.7
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 29 3.5
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572... 29 4.7
01_06_1682 - 39130696-39131705,39132355-39132583 29 4.7
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 28 6.2
10_08_0406 - 17688069-17690643,17691065-17691132 28 8.1
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693... 28 8.1
07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402... 28 8.1
05_03_0170 - 9132207-9133010,9133232-9133894 28 8.1
>03_05_0799 + 27809301-27811550
Length = 749
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 225 PNQFHDRCVPCPGL--GEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCRDG 383
P ++H CVPCP G G C Y +G +CW Q Y +C+DG
Sbjct: 302 PRKYHYSCVPCPDFRKGVCRRGDMC-EYAHGVFECWLHPAQ-----YRTRLCKDG 350
>08_02_0168 - 13640894-13641973
Length = 359
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 243 RCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCR 377
R P PG+G CF C T W GKC C + + VCR
Sbjct: 279 RAFPKPGMGMVCFR--CGDAHRRTECRWAGKCSICSQDHKDVVCR 321
>12_02_0528 + 20059613-20061472
Length = 619
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 225 PNQFHDRCVPCPGL--GEKC-FGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCRDGI 386
P ++H CVPCP G C G C Y +G + W Q Y +C+DG+
Sbjct: 209 PRKYHYSCVPCPEFKKGAGCRRGDMC-EYAHGVFESWLHPAQ-----YRTRLCKDGV 259
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Frame = +3
Query: 198 KCYCADGFVPNQFHDR-CVPCPGLGEK----CFGPCCNRYGNGTLQCWQGKCQQCYDSYG 362
+C C++G+ N + D C +K C+G C N G T C +G ++
Sbjct: 286 RCRCSNGYQGNPYLDSGCTDIDECQDKEKYGCYGDCTNTIGGYTCLCPRGTIGNVHEKN- 344
Query: 363 NFVCRDGIDQILLISTTQIVMGSALILGIIATFILLYKLCAATTIGPFGGEFEQN 527
VCR D+ +G + + + F L +L I FEQN
Sbjct: 345 --VCRPK-DKFTFALKAVTGVGLGVFMSVFMAFWLRLRLQKRKLIRTRQKFFEQN 396
>05_01_0212 + 1601861-1603600
Length = 579
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +3
Query: 225 PNQFHDRCVPCPGL--GEKC-FGPCCNRYGNGTLQCW----QGKCQQCYDSYG 362
P ++ CVPCP G C G C Y +G +CW Q + + C D G
Sbjct: 226 PRRYSYSCVPCPEFRKGGSCRKGDAC-EYAHGVFECWLHPAQYRTRLCKDEVG 277
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +3
Query: 198 KCYCADGFVPNQFHDRCVPCPGLGE-------KCFGPCCNRYGNGTLQCWQG 332
+CYC+DG+ N + D C + E C+G C N G QC G
Sbjct: 204 RCYCSDGYEGNPYVDG--GCRDIDECKSPHIYPCYGDCKNTRGGYDCQCHHG 253
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 185 FIFDSYAIYSETLFFIVTDRLGAREHKKTSE 93
F+F +A S+TLF + D G+R H++ E
Sbjct: 714 FLFTKFASSSQTLFDLFPDSFGSRLHERNKE 744
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 674 TIVYKSRVQICYSWIHGYIRCWCPGIPW 591
T+VYKSR + + G IRC GI W
Sbjct: 436 TLVYKSRGEYAKKCVVGRIRCVLDGITW 463
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +3
Query: 198 KCYCADGFVPNQFHDR-CVP---CPGLGE-KCFGPCCNRYGNGTLQCWQGKCQQCYDSYG 362
+C C+ G+ N + D C C E CFG C N G+ T +C G + G
Sbjct: 301 RCRCSKGYEGNPYLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPG-------TSG 353
Query: 363 NFVCRDGIDQILLISTTQIVMGSALILGI-IATFILLYKL 479
N +G + T + + ++ G+ + F+LL+ L
Sbjct: 354 NATQENG-----CLPTDKFTLALKVVTGVSVGVFLLLFML 388
>02_05_0669 -
30755406-30756081,30756869-30756933,30757040-30757209,
30757313-30757496,30758536-30758619,30758740-30758938,
30760200-30760441,30761811-30762053
Length = 620
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 234 FHDRCVPCPGLGEKCFGPCCNRYGN 308
F CV P LGE GPC +R G+
Sbjct: 331 FQHHCVWAPVLGELPLGPCSHRQGS 355
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -1
Query: 331 PCQH*SVPFPYLLQQGPKHFSPRPGHGTQRSWNWFGTNPSAQ*HFPFIHSYSTPMQFIA 155
P Q+ S PF Y P FSP P + + + + P + H P + Y+ P + A
Sbjct: 193 PYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNSYQA 251
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 AESVSDYEEQCFAINCIGVEYECIKGKCYCADGFVPNQF-----HDRCVPCPGLGEKCFG 284
+E + C + N Y+ + KC+C+DG+ N + HD C+G
Sbjct: 269 SECTYESAPDCLSANSFCHAYD-LGYKCHCSDGYQGNPYIRGGCHDIDECKSPQDYSCYG 327
Query: 285 PCCNRYGNGTLQCWQG 332
C N G+ C +G
Sbjct: 328 NCNNTPGSHICDCPRG 343
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = -1
Query: 655 EFRYAIAGYTAISVVGVLEYLGGASRNLSSTYTWRLPIDRRWLFCSNSPPKGPMVVAAH 479
EFRY + G T I + VL L A LS ++RR CS + P+VVAA+
Sbjct: 197 EFRYYLLGLTLIYIFTVLWSLCLAKLVLSL-------LNRRLASCSLHTARNPLVVAAY 248
>09_02_0288 +
6936867-6936879,6936965-6937038,6937445-6937588,
6937754-6937958,6938552-6938852,6938952-6939150,
6939393-6939477,6939554-6939595,6939676-6939724,
6939872-6939941,6940296-6940301
Length = 395
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 46 CSKISFEIVKCKSGSRSLVFLCSRAPSLS 132
C + IV+C GS++ + LCS P L+
Sbjct: 35 CDSATRTIVQCNVGSKTPIILCSLNPKLA 63
>07_01_0546 -
4024282-4024291,4024486-4024550,4024739-4024904,
4025012-4025160,4025332-4025440,4025532-4025725,
4025839-4025974,4026123-4026623,4026709-4026813,
4027023-4027113,4027325-4027411,4028038-4028128,
4028307-4028336
Length = 577
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 193 KGNVTAPMDSYQTSSMIVVCHVQA*EKNASAL 288
KG+++ M +QTS + CH+ + EK L
Sbjct: 347 KGSISISMSLHQTSFCFICCHLTSGEKEGDEL 378
>05_03_0170 - 9132207-9133010,9133232-9133894
Length = 488
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 313 VPFPYLLQQGPKHFSPRPGHGTQRSW 236
VP P L +Q P+ R G GT +SW
Sbjct: 20 VPVPELHRQAPRRRGRRGGGGTVKSW 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,235,448
Number of Sequences: 37544
Number of extensions: 498316
Number of successful extensions: 1215
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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