Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d01
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.67 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.2  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 489 TNPSEQRWIVRILFIVPI 542
           T PSEQ+W + +L I P+
Sbjct: 372 TVPSEQQWGILVLIIAPL 389


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 430 NIPAMTCALRVCRNMGSC 377
           NI    C+   CRN GSC
Sbjct: 104 NINTDDCSPNPCRNNGSC 121


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 266 KQCDNNL*SNSQNEYHRYGEY 328
           +Q +NN  +N+QN +H  G +
Sbjct: 309 QQNNNNAATNNQNHHHHAGHH 329



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 386 HIPADPQRAGHRGNIRVHGSIHYLP 460
           HIPA        G IR HG  +Y P
Sbjct: 56  HIPAKRAAYDCEGVIRHHGQWNYSP 80


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 426  IFVFTALFITCQQIYQHLRW 485
            +FV     +T ++ Y H++W
Sbjct: 1278 LFVLIVFLLTLKKDYLHIKW 1297


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 426  IFVFTALFITCQQIYQHLRW 485
            +FV     +T ++ Y H++W
Sbjct: 1278 LFVLIVFLLTLKKDYLHIKW 1297


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 591 YYVYFFTVRDCYEAFVIYS 647
           YY  FF V   Y   +IYS
Sbjct: 116 YYYAFFGVHLAYGVVIIYS 134


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +1

Query: 487 TQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTTFTSSP--SGIVMKRS*SIASCPC 660
           T+T   N G+C   ++S       G+  S+    +    SSP  +G   +   +  +C C
Sbjct: 28  TETSCMNGGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLNGATCQDHTTHYTCHC 87

Query: 661 ATSTSG 678
               +G
Sbjct: 88  PYGYTG 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,985
Number of Sequences: 336
Number of extensions: 4265
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)