Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4d01
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 68 1e-12
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 35 0.011
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.32
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.73
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 29 0.97
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.7
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 28 1.7
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ... 27 3.0
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 3.9
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 3.9
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 3.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 5.2
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 68.1 bits (159), Expect = 1e-12
Identities = 38/98 (38%), Positives = 54/98 (55%)
Frame = +3
Query: 417 IAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGDSYY 596
+ G FV AL ++C I HL+ Y P QR +VRIL ++ IY S++S+ +N +
Sbjct: 8 LCGFFVAIALVLSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSV--YN-EKIG 64
Query: 597 VYFFTVRDCYEAFVIYSFLSLCYEYLGGEGNIMSELRG 710
F R+ YEAF +Y F L +YLGGE + L G
Sbjct: 65 SIFEPFREIYEAFALYCFFCLLIDYLGGERAAVISLHG 102
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 35.1 bits (77), Expect = 0.011
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +3
Query: 279 TIYNQILRMSTTDTVNITAQRISEIVHDVLKPLQEPIFLQTRSAQV--IAGIFVFT-ALF 449
++Y L+ T ++ ++++IV +LK + + AQ+ ++G F +F
Sbjct: 592 SVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVWNTYAQLEHLSGAFTMAETIF 651
Query: 450 ITCQQIY-QHLRWYTNPSEQR-WIVRILFIVPIYGCYSWISLLFFNGD 587
T QI+ LR+ N + + W R L I GC I L F GD
Sbjct: 652 KTIFQIHASQLRYIDNLNVYKNWAFRKLLINDTEGCLVIIKCLLFPGD 699
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.32
Identities = 26/91 (28%), Positives = 36/91 (39%)
Frame = +1
Query: 469 TSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTTFTSSPSGIVMKRS*SIA 648
TS G+ +N S +S T T+ L +S++ +TFTSS S A
Sbjct: 577 TSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSA 636
Query: 649 SCPCATSTSGAKGT*CRSCAGGRCARPASTA 741
S P + ST T S P S+A
Sbjct: 637 STPLSNSTVAPTSTFTSSGFNTTSGLPTSSA 667
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 487 TQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTTFTSSPSGIVMKRS*SIASCPCAT 666
+ T SN + S SS + T+ SSS+ + S+ S + S + + AT
Sbjct: 182 SSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 241
Query: 667 STS 675
S+S
Sbjct: 242 SSS 244
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.73
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 469 TSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTTFTSSPSGIVMKRS*SIA 648
+S T S+ S S SS ++ ++ SSS + ++ +SS S S S +
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 649 SCPCATSTSGA-KGT*CRSCAGGRCARPASTA 741
S P +STS + + S + +RP+S++
Sbjct: 207 SVPITSSTSSSHSSSSSSSSSSSSSSRPSSSS 238
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 0.97
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 692 YVPFAPEVLVAQGQEAIDHERFITI 618
YV F P +LV + +D+ERFIT+
Sbjct: 171 YVFFFPSLLVGPAFDYVDYERFITL 195
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.7
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Frame = +1
Query: 382 SPYSCRPAARRSSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTA- 558
S S ++ SS S S S +S + + S+ S S +SS ++ ++
Sbjct: 258 SSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSF 317
Query: 559 -GYLCSSSMETLTTFTSSP---SGIVMKRS*SIASCPCATSTSGAKGT 690
L SSSM + ++F+SSP S + S S +S +++TS +K +
Sbjct: 318 SSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS 365
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 469 TSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTTFTSSPSGIVMKRS*SIA 648
+S T + + + SYLSS ++ SSS TLT+ + S S I S S +
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS-SSS 248
Query: 649 SCPCATSTSGAKGT 690
S + S+S + T
Sbjct: 249 STSSSLSSSSSSST 262
Score = 26.6 bits (56), Expect = 3.9
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = +1
Query: 418 SREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTT 597
S S S S L++ +S + + S++ S S SS T+ ++ SSS + T
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301
Query: 598 FTSSPSGIVMKRS*SIASCPCATSTSGA 681
TSS S S +S ++S S +
Sbjct: 302 STSSTISSSSSSSSSFSSTLSSSSMSSS 329
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/107 (21%), Positives = 48/107 (44%)
Frame = +3
Query: 258 QKENSVITIYNQILRMSTTDTVNITAQRISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVF 437
+ +N + + Y +L +++T T+N + + + ++ + +R+A +IA F+
Sbjct: 1118 ETQNKMFSAY--MLTVASTSTMNGLQPKFIYF-RSIYEQYEQNTAIYSRTAFIIA-FFLV 1173
Query: 438 TALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFF 578
A+ C WY PS +P YG ++W+ L+ F
Sbjct: 1174 EAVINCCFATLFFFGWYY-PSG---FYEFNHNIPFYGGFAWLMLMIF 1216
>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 293 NSQNEYHRYGEYNR 334
+ N Y+RYGEYNR
Sbjct: 51 SQMNHYYRYGEYNR 64
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 445 YSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSS-SMETLT 594
Y L N++ + V T +NVG + Q++ T GY+C S S E L+
Sbjct: 120 YELATNQWPDLMV---TLVANVGEGQPSALKQHSLQTIGYICESVSPEVLS 167
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 499 DGFVYQRKCWYICWQVMNRAVNTNIPAMTCAL-RVCRNM 386
DG+ Q +C I + V +R N+P L RVC N+
Sbjct: 76 DGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENI 114
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 736 LTQDARTGRPRNSDIMFPSPP 674
LTQ G N D MFP PP
Sbjct: 358 LTQQDELGIAENDDAMFPKPP 378
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +1
Query: 481 VGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLTTF----TSSPSGI--VMKRS*S 642
+ + + S S S LSS ++ ++ L SS T +TF TSSPS I + S +
Sbjct: 564 ISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSST 623
Query: 643 IASCPCATSTS 675
I S P +++S
Sbjct: 624 ILSSPTPSTSS 634
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 459 QQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGDSYYVY 602
+Q Y+ L +P E RW++ IL V YG L F+ D+ +Y
Sbjct: 190 EQFYRSL----SPLELRWLIPILLKVRKYGTSEKFILSVFHPDAARLY 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,360
Number of Sequences: 5004
Number of extensions: 67061
Number of successful extensions: 223
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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