Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d01
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470...    78   7e-15
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016...    77   1e-14
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926...    70   2e-12
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    68   7e-12
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    68   7e-12
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313...    67   2e-11
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668...    64   9e-11
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807...    61   1e-09

>03_06_0530 -
           34545699-34546013,34546121-34546354,34547006-34547078,
           34548226-34548299,34548852-34549004
          Length = 282

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 36/88 (40%), Positives = 57/88 (64%)
 Frame = +3

Query: 441 ALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGDSYYVYFFTVRD 620
           A  I    IY+HL  Y  P  QR+IVR++F+VP+Y   S++SL+  +     +YF ++R+
Sbjct: 19  ATVIALVHIYRHLLHYAEPIYQRFIVRLIFMVPVYAVMSFLSLILPDNS---IYFNSIRE 75

Query: 621 CYEAFVIYSFLSLCYEYLGGEGNIMSEL 704
            Y+A+VIY+F SLC  ++GG G ++  L
Sbjct: 76  IYDAWVIYNFFSLCLAWVGGPGAVVGVL 103


>03_04_0019 +
           16500877-16501029,16501184-16501240,16501560-16501668,
           16501837-16502021,16502103-16502182,16502869-16503085,
           16503394-16503633,16503720-16504028
          Length = 449

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 39/103 (37%), Positives = 57/103 (55%)
 Frame = +3

Query: 405 SAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNG 584
           S  ++   FV  AL ++   I QHLR Y+NP EQ+WI+ +LF+VP+Y   S ISL     
Sbjct: 20  SVVLVGAAFVLVALLVSLWLILQHLRSYSNPEEQKWIIAVLFMVPVYASESIISLWH--- 76

Query: 585 DSYYVYFFTVRDCYEAFVIYSFLSLCYEYLGGEGNIMSELRGR 713
             + +    +R+CYEAF +Y+F       LGGE  +   L  +
Sbjct: 77  SEFSLACDILRNCYEAFALYAFGRYLVACLGGERQVFRLLENK 119


>06_03_1475 -
           30391555-30391890,30391982-30392233,30392358-30392619,
           30393232-30393320,30393408-30393592,30393673-30393781,
           30393886-30393942,30394047-30394196
          Length = 479

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 42/122 (34%), Positives = 66/122 (54%)
 Frame = +3

Query: 342 ISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVR 521
           ++E ++ V +    PI+     A + AGIFV T+L ++   ++ HL  Y NP EQ+++V 
Sbjct: 3   LAEQLYSVFRSYAPPIW-----ASITAGIFVITSLSLSLFLLFNHLSAYKNPEEQKFLVG 57

Query: 522 ILFIVPIYGCYSWISLLFFNGDSYYVYFFTVRDCYEAFVIYSFLSLCYEYLGGEGNIMSE 701
           ++ +VP Y   S+ISL+     S  V    +RD YEAF +Y F       LGGE   +  
Sbjct: 58  VILMVPCYAVESYISLV---NPSISVDIEILRDGYEAFAMYCFGRYLVACLGGEDRTIEF 114

Query: 702 LR 707
           L+
Sbjct: 115 LK 116


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
 Frame = +3

Query: 420 AGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGD-SYY 596
           A   V  ++  T Q + QHL ++ NP EQ+ I+ I+ + P+Y   S++ LL   G  +++
Sbjct: 24  AACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFF 83

Query: 597 VYFFTVRDCYEAFVIYSFLSLCYEYLG---GEGNIMSELRGRPVRAS 728
            +   V++CYEA  I  F++L Y YL     +  +  E++GR +  S
Sbjct: 84  TFLDAVKECYEALAIAKFMALMYSYLNISISKNIVPDEIKGRVLHHS 130


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 36/100 (36%), Positives = 60/100 (60%)
 Frame = +3

Query: 408 AQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGD 587
           A +I+G F+  ++ ++   I+QHL  Y NP EQ++++ ++ +VP Y   S++SL+  N D
Sbjct: 21  AILISGFFMLLSVSLSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLV--NPD 78

Query: 588 SYYVYFFTVRDCYEAFVIYSFLSLCYEYLGGEGNIMSELR 707
           +  VY   +RD YEAF +Y F       LGGE   ++ L+
Sbjct: 79  T-SVYCGILRDAYEAFAMYCFGRYITACLGGEERTIAFLK 117


>05_06_0083 +
           25429958-25429967,25431035-25431144,25431286-25431342,
           25431828-25431936,25432329-25432513,25432595-25432683,
           25432877-25433132,25433623-25433865,25433955-25434266
          Length = 456

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 58/100 (58%)
 Frame = +3

Query: 414 VIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGDSY 593
           V AGI V  +L ++   I++HL  Y  P EQ++++ ++ +VP+Y   S+ SLL  N +  
Sbjct: 12  VSAGISVTASLVLSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLL--NSNVA 69

Query: 594 YVYFFTVRDCYEAFVIYSFLSLCYEYLGGEGNIMSELRGR 713
           ++    +RDCYEAF +Y F       LGGE + +  + GR
Sbjct: 70  FICEL-MRDCYEAFAMYCFERYLIACLGGEESTIRFMEGR 108


>04_04_0803 -
           28165828-28166136,28166257-28166505,28166628-28166889,
           28168116-28168204,28168286-28168342,28168443-28168595
          Length = 372

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 31/81 (38%), Positives = 50/81 (61%)
 Frame = +3

Query: 408 AQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGD 587
           A ++AG FV  +L ++   I++HL  Y NP EQ++++ ++ +VP Y   S++SL+  N  
Sbjct: 21  ATLVAGFFVLLSLSLSIYLIFEHLSAYNNPEEQKFVLGVILMVPCYAIESYVSLINPNTS 80

Query: 588 SYYVYFFTVRDCYEAFVIYSF 650
              VY   +RD YEAF +Y F
Sbjct: 81  ---VYCGILRDGYEAFAMYCF 98


>07_01_0961 +
           8070992-8071015,8071016-8071089,8073051-8073200,
           8073307-8073592,8074077-8074220,8074357-8074665
          Length = 328

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 29/75 (38%), Positives = 48/75 (64%)
 Frame = +3

Query: 531 IVPIYGCYSWISLLFFNGDSYYVYFFTVRDCYEAFVIYSFLSLCYEYLGGEGNIMSELRG 710
           IV +Y   S++SL+   G +  +YF ++R+ Y+A+VIY+F SLC  ++GG G ++  L G
Sbjct: 6   IVQVYAVMSFLSLVL-PGSA--IYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVVSLTG 62

Query: 711 RPVRASCVNGTCCLA 755
           R ++ S    TCC +
Sbjct: 63  RSLKPSWFMMTCCFS 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,766,377
Number of Sequences: 37544
Number of extensions: 403405
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)