Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c23
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical... 220 9e-58
AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical ... 220 9e-58
AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical... 215 4e-56
AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical... 215 4e-56
AL161712-8|CAC70133.1| 340|Caenorhabditis elegans Hypothetical ... 30 1.9
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 30 1.9
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 4.4
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 5.9
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 5.9
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 28 7.8
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 28 7.8
AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical ... 28 7.8
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical... 28 7.8
>AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical
protein Y62E10A.13b protein.
Length = 279
Score = 220 bits (537), Expect = 9e-58
Identities = 111/204 (54%), Positives = 141/204 (69%), Gaps = 4/204 (1%)
Frame = +2
Query: 122 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 301
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F++AL
Sbjct: 46 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRDALA 105
Query: 302 KRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAERL 481
RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE L
Sbjct: 106 ARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAELL 165
Query: 482 NIPTINIFANRLKFYFNGEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIVGD 649
I I+AN + F G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+VGD
Sbjct: 166 GIEKSRIYANEILFDKFGKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMVGD 225
Query: 650 GATDAEASPPADGFIGFGGNVVRD 721
GATD EASPPAD FIGFGGNV+R+
Sbjct: 226 GATDVEASPPADAFIGFGGNVIRE 249
>AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical
protein Y62E10A.13a protein.
Length = 276
Score = 220 bits (537), Expect = 9e-58
Identities = 111/204 (54%), Positives = 141/204 (69%), Gaps = 4/204 (1%)
Frame = +2
Query: 122 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 301
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F++AL
Sbjct: 43 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRDALA 102
Query: 302 KRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAERL 481
RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE L
Sbjct: 103 ARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAELL 162
Query: 482 NIPTINIFANRLKFYFNGEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIVGD 649
I I+AN + F G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+VGD
Sbjct: 163 GIEKSRIYANEILFDKFGKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMVGD 222
Query: 650 GATDAEASPPADGFIGFGGNVVRD 721
GATD EASPPAD FIGFGGNV+R+
Sbjct: 223 GATDVEASPPADAFIGFGGNVIRE 246
>AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical
protein Y62E10A.13d protein.
Length = 282
Score = 215 bits (524), Expect = 4e-56
Identities = 111/206 (53%), Positives = 141/206 (68%), Gaps = 6/206 (2%)
Frame = +2
Query: 122 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQ--EA 295
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F+ +A
Sbjct: 47 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRYRDA 106
Query: 296 LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAE 475
L RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE
Sbjct: 107 LAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAE 166
Query: 476 RLNIPTINIFANRLKFYFNGEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIV 643
L I I+AN + F G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+V
Sbjct: 167 LLGIEKSRIYANEILFDKFGKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMV 226
Query: 644 GDGATDAEASPPADGFIGFGGNVVRD 721
GDGATD EASPPAD FIGFGGNV+R+
Sbjct: 227 GDGATDVEASPPADAFIGFGGNVIRE 252
>AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical
protein Y62E10A.13c protein.
Length = 265
Score = 215 bits (524), Expect = 4e-56
Identities = 111/206 (53%), Positives = 141/206 (68%), Gaps = 6/206 (2%)
Frame = +2
Query: 122 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQ--EA 295
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F+ +A
Sbjct: 30 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRYRDA 89
Query: 296 LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAE 475
L RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE
Sbjct: 90 LAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAE 149
Query: 476 RLNIPTINIFANRLKFYFNGEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIV 643
L I I+AN + F G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+V
Sbjct: 150 LLGIEKSRIYANEILFDKFGKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMV 209
Query: 644 GDGATDAEASPPADGFIGFGGNVVRD 721
GDGATD EASPPAD FIGFGGNV+R+
Sbjct: 210 GDGATDVEASPPADAFIGFGGNVIRE 235
>AL161712-8|CAC70133.1| 340|Caenorhabditis elegans Hypothetical
protein Y66D12A.11 protein.
Length = 340
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 715 HHVTPEANEAVSRWASLGIGSPVPDDHQALVPVQFLQSSHH*TFATRSRCWLVFI 551
HHV + + S AS G S +H A+ + ++ +++ S CWL+ +
Sbjct: 267 HHVIKQDKDIPSPGASSG--STQAPEHSAIPSISMIRKMERIFYSSESSCWLIVV 319
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 29.9 bits (64), Expect = 1.9
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 3/189 (1%)
Frame = -2
Query: 708 LPPKPMKPSAGGLASASVAPSPTITRRWYPCNSFSRLTTKPLPPDLDVGSFSSKPAYSPL 529
+PPKP K S +++AP+ P + + +T P P + S + K ++ L
Sbjct: 288 VPPKPAKISVADPPPSTIAPAAPSAPAPAP-SQLNPTSTSPTMPAIAPSSSALKSNFAAL 346
Query: 528 K*NLSRLAKMLIVGMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSVIPGVSLTGNFSM 349
+ +SR K++ + R + T P NS T+ V +T N +
Sbjct: 347 QEKMSRNLKVVAPEKVASIQKPDQRDRSSTGESTTGEPSIDNSATDQVAELQHITKNRAR 406
Query: 348 NSLI*PTLGLMMSSLFFKASWNVIL--PPIASAVSLLTSSPF-PQNLASSSMPSSCMTVE 178
P +M + S N L P S V+ +++S F P S+PS+
Sbjct: 407 PPKNRPMSMVMNRNRSSDESPNGRLSSPTSISTVNPMSASMFVPATAKEISIPSNSSATS 466
Query: 177 STSKQTQSA 151
S K + A
Sbjct: 467 SPFKSSSIA 475
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 276 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 148
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 482 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 524
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 276 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 148
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 689 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 731
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 276 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 148
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 689 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 731
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 236 DEVKRLTAEAMGGNMTFQEALKKRLDIIRPN 328
D+VK +T E M GNM + RLD+ P+
Sbjct: 385 DDVKMITGEEMKGNMADFSDILTRLDLAPPS 415
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.3 bits (60), Expect = 5.9
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Frame = -2
Query: 435 TRYTMTPLSCNSFTNSVIPGVSLTGNFSMNSL--I*PTLGLMMSS-----LFFKASWNVI 277
T T + S S NSV S G+F++ S I T G M SS +A +
Sbjct: 429 TGMTTSQASLRSTQNSV---TSTPGSFTVTSTPTITSTQGAMASSSSNSPTSTQAISSST 485
Query: 276 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTVCWG 118
+ +AS+ TSS ++ASSS PS TV + S T + V + T +G
Sbjct: 486 VTTVASSTIAPTSSQESSSIASSSAPSQSTTVITVS--TTATVSSGQSTSTFG 536
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 240 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 136
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 240 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 136
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 173 VDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIRE 346
+D+ + E L K KG+E+ R AEA G ++ +KKR++ + + GQIR+
Sbjct: 1766 IDTELASHEPQVSLVKL--KGEELLRSAAEAGVG----EDQIKKRMEDLEQSWGQIRD 1817
>AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical
protein H37A05.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 353 EKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFA--NRLKFY 526
E + + +T LVKELH R V +Y + R +P +N+ ++ F + LK Y
Sbjct: 96 ETWDIEKMKSMTSLVKELHNREVDMYRII--MRE--KPACPTVNVLSLEAFTELSPLKAY 151
Query: 527 FNGEY 541
EY
Sbjct: 152 IISEY 156
>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
protein Y51H7C.11 protein.
Length = 1058
Score = 27.9 bits (59), Expect = 7.8
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Frame = +2
Query: 149 TADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMT--FQEALKKRLDIIR 322
+AD V F VDS V D ++E ++ K L + N+T + E +KK L I
Sbjct: 295 SADDVEF-VDS-VEDDVDVEEYSQLFDVNLVWKNLN---LASNLTKNYMERMKKELTICY 349
Query: 323 PNVGQIRE----FIEKFPV--------RLTPGITELVKELHERGV 421
P +GQ+ FIEK PV RL I++L + L E G+
Sbjct: 350 PLLGQVYAFDPIFIEKLPVFAHYDHVARLHINISQLAEHLVEFGI 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,540
Number of Sequences: 27780
Number of extensions: 339210
Number of successful extensions: 1445
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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