Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c22
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0054 + 463743-464414,464896-465024,465336-465440,465524-46... 32 0.55
11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41... 32 0.55
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 0.95
08_02_0498 - 17815189-17815249,17815852-17815938,17816532-178165... 31 1.3
12_02_1279 + 27510605-27513301 30 1.7
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 30 2.2
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 2.2
04_04_0810 + 28240804-28240922,28242464-28242548 29 3.9
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 29 3.9
>12_01_0054 +
463743-464414,464896-465024,465336-465440,465524-465917,
466325-466422,466505-466753,466920-466979
Length = 568
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 476 LKNVLRLICSCCRYYINICYANFSGFFCITYVTITVNFIFLIRSQWIYLVCTRVRHFRHI 297
LKN+L+L +CCR ++ A + C + +++ + L+ S+ + L+ R H +
Sbjct: 365 LKNLLKLDVTCCRKITDVSLAAIT-TSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEEL 423
Query: 296 QL 291
L
Sbjct: 424 DL 425
>11_01_0054 +
416626-417297,417757-417885,418197-418301,418385-418778,
419186-419283,419366-419614,419784-419843
Length = 568
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 476 LKNVLRLICSCCRYYINICYANFSGFFCITYVTITVNFIFLIRSQWIYLVCTRVRHFRHI 297
LKN+L+L +CCR ++ A + C + +++ + L+ S+ + L+ R H +
Sbjct: 365 LKNLLKLDVTCCRKITDVSLAAIT-TSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEEL 423
Query: 296 QL 291
L
Sbjct: 424 DL 425
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 31.1 bits (67), Expect = 0.95
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Frame = +3
Query: 255 AIALAEEKERLKQLNVSEVSYPSTDEINPLTSDEKNEINCDS--NIGDTKETAEVSITDI 428
++ +E++ Q N+++ +T+E LT E + +S +I DT+ T +I
Sbjct: 1031 SVEASEDQAIAHQSNITQCEEQATEE--SLTESEPQILEMESVQDIKDTEATESETIFQK 1088
Query: 429 NIIPATTANESQNILQPTLVKFNYEGSLLDDPDPLETYKLNAKVSKI--QYNHNIDTLTY 602
NI+P + + + F+ + + +D L K +I Q + I T
Sbjct: 1089 NIVPTSEESVPEENATAKEPAFD-DREIQNDGAELTKEHDGVKDEEIPDQSSGAIVEETA 1147
Query: 603 RDFENDTSSPFDNVELKTINDMELLAQVLQSQKESXCQ 716
++ S P D+V++K + E+ V +E+ CQ
Sbjct: 1148 QEANLLASEPTDDVQVKELEPEEISNTVDGETEEASCQ 1185
>08_02_0498 -
17815189-17815249,17815852-17815938,17816532-17816587,
17816625-17816721,17817085-17817152
Length = 122
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 398 FCITYVTITVNFIFLIRSQWIYLVCTRVRHFRHIQLFQPFFFLCQSYGI 252
+C+ V N F + S WIY VCT V H + +++ Q +L G+
Sbjct: 59 YCVLSVDTLENDAFSLSSVWIYSVCT-VSHPQDLEISQQQQYLQPRIGV 106
>12_02_1279 + 27510605-27513301
Length = 898
Score = 30.3 bits (65), Expect = 1.7
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +3
Query: 438 PATTANESQNILQPTLVKFNYEGSLLDDPDPLETY-----KLNAKVSKIQYNHNIDT--L 596
P TA ILQ ++ +G L DPDP Y +L A V+ ++ +DT L
Sbjct: 94 PVWTATAGTTILQSIVLSLTAQGLALSDPDPAADYAWSTPRLRAPVAALRL---LDTGEL 150
Query: 597 TYRDFENDTS-SPFDNVELKTINDMELLAQVL 689
D N T S FD+ + LLA VL
Sbjct: 151 ALLDAANATLWSSFDHPTDTLLPAQPLLAGVL 182
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.9 bits (64), Expect = 2.2
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Frame = +3
Query: 261 ALAEEKERLKQLNVSEVSYPSTDEINPLTSDEKNEINCDS----NIGDTKETAEVSI--T 422
+++ KE K+L P EI+ + DE+++ +C+S N+ KET I +
Sbjct: 246 SISSNKEEFKELLWKISQNPDVTEIDANSEDEQHQGDCNSEDKRNLKFNKETLGTGIFPS 305
Query: 423 DINIIPATTANESQNILQPTLVKFNYEGSLLDDPDPLETYKLNAKVSKIQYNHNIDTLTY 602
D + +N+ NI+ L K +E L + T LNA + D Y
Sbjct: 306 DFDNTNVQQSNDLVNIMLERL-KALHEDELASLAVIVATSGLNAVLQS-------DRGKY 357
Query: 603 RDFENDTSSPFDNVELKTINDMELLAQVLQSQKESXCQL 719
++ E+ S + + VLQ +KE +L
Sbjct: 358 QETESVNSFTSQRAHSRRYSTAASFVDVLQPKKEVTSEL 396
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 252 DAIALAEEKERLKQLNVSEVSYPSTDEINPLTSDEK 359
D +A+A+ K + K + VS+P+T+E TSD+K
Sbjct: 216 DPVAVAQAKAKRKAQKLDIVSHPNTNEGRDDTSDDK 251
>04_04_0810 + 28240804-28240922,28242464-28242548
Length = 67
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 618 DTSSPFDNVELKTINDMELLAQVLQSQKESXCQLF 722
D S DNV + DME+ VL S++ C+L+
Sbjct: 13 DGESGVDNVSDARVGDMEIGTVVLMSRRNKICELY 47
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 476 LKNVLRLICSCCRYYINICYANFSGFFCITYVTITVNFIFLIRS-QWIYL 330
L +L ++C +++CY +GFF V +V F F R W+YL
Sbjct: 98 LARLLSIVCVWSICQVDVCYDVSTGFFVRWMVGKSVRFRFGDRRIDWVYL 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,921
Number of Sequences: 37544
Number of extensions: 282617
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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