Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c22
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533551-1|CAG38582.1|  502|Homo sapiens UBAP1 protein.                31   3.3  
BC100668-1|AAI00669.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
BC099726-1|AAH99726.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
BC098316-1|AAH98316.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
BC098141-1|AAH98141.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
BC020950-1|AAH20950.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
AL353662-3|CAI15915.1|  441|Homo sapiens ubiquitin associated pr...    31   3.3  
AL353662-2|CAI15914.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
AK223235-1|BAD96955.1|  502|Homo sapiens ubiquitin associated pr...    31   3.3  
AK074995-1|BAC11342.1|  502|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK074969-1|BAC11323.1|  502|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK074812-1|BAC11224.1|  502|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK074745-1|BAC11176.1|  502|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK074724-1|BAC11162.1|  401|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AF222043-1|AAF37827.2|  502|Homo sapiens ubiquitin-associated pr...    31   3.3  

>CR533551-1|CAG38582.1|  502|Homo sapiens UBAP1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>BC100668-1|AAI00669.1|  502|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>BC099726-1|AAH99726.1|  502|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>BC098316-1|AAH98316.1|  502|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>BC098141-1|AAH98141.1|  502|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>BC020950-1|AAH20950.1|  502|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AL353662-3|CAI15915.1|  441|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 441

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AL353662-2|CAI15914.1|  502|Homo sapiens ubiquitin associated
           protein 1 protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AK223235-1|BAD96955.1|  502|Homo sapiens ubiquitin associated
           protein variant protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AK074995-1|BAC11342.1|  502|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90514 fis, clone NT2RP3004374. ).
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AK074969-1|BAC11323.1|  502|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90488 fis, clone NT2RP3003469. ).
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AK074812-1|BAC11224.1|  502|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90331 fis, clone NT2RP2002015. ).
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AK074745-1|BAC11176.1|  502|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90264 fis, clone NT2RM4001321. ).
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


>AK074724-1|BAC11162.1|  401|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90243 fis, clone NT2RM2001643. ).
          Length = 401

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 57  DFECE-EDPFDNLELKTIDEKEELRNIL 83


>AF222043-1|AAF37827.2|  502|Homo sapiens ubiquitin-associated
           protein protein.
          Length = 502

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 606 DFENDTSSPFDNVELKTINDMELLAQVL 689
           DFE +   PFDN+ELKTI++ E L  +L
Sbjct: 158 DFECE-EDPFDNLELKTIDEKEELRNIL 184


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,066,554
Number of Sequences: 237096
Number of extensions: 1714694
Number of successful extensions: 3745
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3745
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)