Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c19
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    29   3.6  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   4.8  
01_06_1092 + 34469732-34470118                                         28   6.3  

>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 217 CATRDDPGLRVRYQGPCSEGNVGFP 291
           C T+ DPG  +R  G   EG+ G+P
Sbjct: 745 CTTKVDPGPDIRTNGDSREGDTGWP 769


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 544  HSLRGSRCCT*YRHCRRPASSRACTCTKGI 455
            H+ + SRCC  Y  C RP  SR+C C+  I
Sbjct: 1032 HTSQASRCCRSYVKCSRP--SRSC-CSHSI 1058


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 436 IVDGPSKYPSCT--CTREMKPVCGSDGITYNNDC 531
           + DG S+   C   C R   PVCG+DG+TY   C
Sbjct: 46  VSDGGSEAQLCPVRCFRP-DPVCGADGVTYWCGC 78



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 148 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEG 276
           C+R   PVCG DG TY       C      G RV  +G C  G
Sbjct: 60  CFRPD-PVCGADGVTY----WCGCPEAACAGARVARRGYCEVG 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,036,985
Number of Sequences: 37544
Number of extensions: 414473
Number of successful extensions: 1006
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)