Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c17
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 1.3
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902 29 1.7
04_01_0039 + 455760-457631 27 3.8
03_06_0251 + 32654223-32654423,32655275-32655589 27 3.8
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 27 3.8
12_02_0903 - 24179533-24180120 27 6.7
08_02_0222 + 14446967-14448310 27 6.7
09_02_0410 - 8672855-8672970,8673062-8673265,8673618-8673768,867... 26 8.9
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237... 26 8.9
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 26 8.9
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 26 8.9
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544... 26 8.9
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 323 GNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 177
GN+ FR PC +LG P S+ CT+Y SR+ + DQ
Sbjct: 211 GNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQ 260
>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
Length = 361
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 248 RYPCTFY-CLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQ 81
++P +Y C HR S+ CM + + +D ++ + G + V AV A KP+
Sbjct: 143 KHPRGYYRCTHRHSQGCMATKQVQRTDEDATVFDVIYHGEHTC-VHKAVAAGAGKPE 198
>04_01_0039 + 455760-457631
Length = 623
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 319 IYLVSGLLLAY-KLHSWVVRPHHHIGTLVPS 230
IY V+G L KLH W+ H+H+G+++P+
Sbjct: 236 IYEVAGKLKKMGKLH-WLKLLHYHVGSMIPT 265
>03_06_0251 + 32654223-32654423,32655275-32655589
Length = 171
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 266 PASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 177
PAS PHRY C + MLQ+ P Q
Sbjct: 43 PASDPHRYACVQRVFGAGNTARMLQQLPVQ 72
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 233 FYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQPFIYACRP 57
F+ + R R L+EH +Q+Q S + + + I + + S P P ++ +P
Sbjct: 313 FFVIRRRKRRAALEEHFEQHQPFTSFPSNEVKDMKPIEESTTID-VESLPSPASFSLKP 370
>12_02_0903 - 24179533-24180120
Length = 195
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 269 RPASSPHR-YPCTFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSR 129
+P+S+PH+ + C F C+ + + L H + ++++ S ++ + R
Sbjct: 63 KPSSAPHKVFSCNF-CMRKFFSSQALGGHQNAHKRERSAAKRSYHAQR 109
>08_02_0222 + 14446967-14448310
Length = 447
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 230 YCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQG--SRSIPVELAVQAIFSKPQP 78
YC H ++C+L P+Q+ Q+L + QG P++ QA+F +P
Sbjct: 303 YCHHDDQQDCVL---PEQHSQELHGYNNEEQGYLLPPEPIDQEEQALFVGGEP 352
>09_02_0410 -
8672855-8672970,8673062-8673265,8673618-8673768,
8674060-8674119,8675019-8675024
Length = 178
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 341 LRTNNTGNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFY 228
++ + GNI +F+ TPC +L P SS C+++
Sbjct: 93 IQPKDGGNIHAFKAITPCAILDILSPPYSSEDGRHCSYF 131
>04_01_0199 -
2377406-2377573,2377649-2377730,2378006-2378274,
2379648-2379788,2380891-2381076,2381529-2381765,
2382077-2382292,2382389-2382719,2382842-2382954,
2383288-2383602,2383713-2383840,2385274-2385547
Length = 819
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 337 EQTTQAIYLVSGLLLAYKLHSWVVRPHHHIGTLV 236
E+T ++ V G+ +L W V P HIG ++
Sbjct: 730 EETNIVLWYVFGVTHVPRLEDWPVMPVEHIGFML 763
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 376 SLNRPILHNIWI*EQTTQA-IYLVSGL 299
SL P++HN+WI T A Y +GL
Sbjct: 287 SLLSPVMHNLWIWRGTGNANFYFATGL 313
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 376 SLNRPILHNIWI*EQTTQA-IYLVSGL 299
SL P++HN+WI T A Y +GL
Sbjct: 283 SLLSPVMHNLWIWRGTGNANFYFATGL 309
>01_05_0474 -
22552599-22552687,22553494-22553631,22553766-22554447,
22555120-22555167,22555395-22556042,22556960-22557310,
22558622-22558690
Length = 674
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 196 SIQ-LREERWRQ*KVQGYLCGDEAGRPKSEAYTQ 294
SIQ L +RW + K+ G++ GD GR E YT+
Sbjct: 630 SIQRLLIKRWLRGKLGGWVHGDYTGRFPLEKYTE 663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,905
Number of Sequences: 37544
Number of extensions: 185626
Number of successful extensions: 393
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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