Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c17
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-4|AAC48144.1|  479|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical...    27   4.5  
U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical...    26   7.9  

>U58735-4|AAC48144.1|  479|Caenorhabditis elegans Hypothetical
           protein F20B4.3 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 218 RSSRNCMLQEHPDQYQQDLSLLRQKFQGSR-SIPVELAVQAIFSKPQP 78
           R++ N M++EH  Q +    L RQ+F   + SIP  LA   I     P
Sbjct: 116 RAAHNHMMEEHRRQSEASPILERQRFTPQQTSIPPGLAEAPILQSASP 163


>AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical
           protein Y113G7B.18 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 187 CSWSIQLREER--WRQ*KVQGYLCGD 258
           C +  +LRE R  WR  KV  Y+CGD
Sbjct: 274 CGFLRELREMREIWRVRKVGDYICGD 299


>U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical
           protein F22H10.6 protein.
          Length = 219

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 284 ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQ-EHPDQYQQDLSLLRQKFQGSRSIPVELA 108
           +S+ G  +S+  RY    +   R ++    Q   P  YQ+    L++K   ++ +P + A
Sbjct: 34  SSICGHFSSTIRRY---HHVSEREAQRFQQQLRQPGCYQE---CLKRKTGTAKEVPAKKA 87

Query: 107 VQAIFSKPQP 78
            + IF+KP P
Sbjct: 88  KEEIFAKPSP 97


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 299 TPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPD 180
           T  + AS L +        P T   LHRS R C    HPD
Sbjct: 36  TELITASELMQKCREKKPVPATLEELHRSQRLCQSAFHPD 75


>AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical
           protein Y60A3A.6 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 380 FFIKQTYIT*-YLDLRTNNTGNIFSFRFTPCV*ASLLGRP 264
           + +  T+I   +LD+ +   G +F+F   PC+ + +  RP
Sbjct: 143 YLLSATFIAPAFLDIPSEEYGRVFTFEKIPCIPSDIPFRP 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,639,825
Number of Sequences: 27780
Number of extensions: 164515
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)