Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c13
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    24   7.5  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   9.7  
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    27   9.7  

>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
            31636653-31637541,31639401-31641266
          Length = 1599

 Score = 23.8 bits (49), Expect(2) = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 240  LVFIELRSIYCDPYLYI 290
            L+ ++   +Y DPYLYI
Sbjct: 1486 LISVQFLELYGDPYLYI 1502



 Score = 21.4 bits (43), Expect(2) = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 294  YYDPYMYITRVDI 332
            Y DPY+YI  V++
Sbjct: 1495 YGDPYLYIRGVEV 1507


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 65   NIWQRAKLRFLADSSIC*NC 6
            N+W+  K++ LADSSI  +C
Sbjct: 2368 NMWKEGKMKDLADSSIMDSC 2387


>01_06_0481 -
           29646245-29646371,29646474-29646556,29646672-29646752,
           29646843-29646899,29647007-29647094,29647304-29647374,
           29647457-29647585,29647662-29648051,29648332-29648517,
           29648612-29648692,29648787-29648879,29648966-29649086,
           29649200-29649409,29649560-29649727,29649898-29650065,
           29650144-29650311,29650453-29650620,29650738-29650905,
           29651023-29651190,29651567-29651734,29652391-29652558,
           29652645-29652812,29655720-29655887,29656069-29656236,
           29656391-29656558,29656670-29656837,29657525-29657664,
           29658033-29658221,29658243-29658315,29658379-29658452,
           29658535-29658654,29658718-29658738,29658794-29658999,
           29659094-29659271,29660066-29660126,29660232-29660341,
           29660427-29660558,29661091-29661258,29661339-29661465,
           29661794-29661831,29663321-29663422,29663505-29663562,
           29663659-29663760,29663844-29663990,29664098-29664234,
           29664313-29664462,29664561-29664720,29665820-29665878,
           29666025-29666181,29666288-29666433,29666523-29666666,
           29667242-29667376
          Length = 2344

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 VLIILWLCEANINSTRLKLKAAARFHSCA 221
           +L+  W C  + NS  LKLK AA  + CA
Sbjct: 844 LLVTQWRCHRD-NSNYLKLKRAALTYQCA 871


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,383,639
Number of Sequences: 37544
Number of extensions: 126442
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)