Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c13
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    27   6.5  
U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    27   8.6  

>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 361 CYLFNMYLTLLFVNSVVIFYVFIN 432
           CY  + Y  +LF NS+V+F + IN
Sbjct: 163 CYSVSWYSDILFNNSLVVFTLAIN 186


>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 34  RNLNFALCQILIQF 75
           RNLN+ LC IL+QF
Sbjct: 62  RNLNYILCTILLQF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,182,387
Number of Sequences: 27780
Number of extensions: 137532
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)