Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c12
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40934-3|AAA81681.1|   79|Caenorhabditis elegans Hypothetical pr...    35   0.019
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF025457-8|AAB70968.2|  383|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical...    26   8.7  

>U40934-3|AAA81681.1|   79|Caenorhabditis elegans Hypothetical
           protein F35H10.5 protein.
          Length = 79

 Score = 35.1 bits (77), Expect = 0.019
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 250 LVTETCLRAVKQAQREGSNKVDVEHIEKCLPQLMLDF 360
           L  E+  RA + A   GS  V  EH+++ + QLMLDF
Sbjct: 41  LAQESVARAAQSAANTGSRHVTKEHLKRVIAQLMLDF 77


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +2

Query: 170 IKDNNNIDPATLLSNVKSTIKKMWPNVWSPRHACVQSNKHRERV 301
           ++D    +   L  N +  ++ +   +W+ +  CVQ N+ R+ +
Sbjct: 858 LRDEKEANTQKLKENHREDVELLEAEIWALKATCVQLNEQRDHI 901


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +2

Query: 170 IKDNNNIDPATLLSNVKSTIKKMWPNVWSPRHACVQSNKHRERV 301
           ++D    +   L  N +  ++ +   +W+ +  CVQ N+ R+ +
Sbjct: 858 LRDEKEANTQKLKENHREDVELLEAEIWALKATCVQLNEQRDHI 901


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 23  QYL-HNFVLYLLDLLYPDTIIVTLILFCNFIRTVFC 127
           +YL H+    L   +Y D IIVTL     F +TV+C
Sbjct: 115 KYLYHDSFSLLAAFVYTDQIIVTLTAENKFNQTVYC 150


>AF025457-8|AAB70968.2|  383|Caenorhabditis elegans Hypothetical
           protein C08E3.9 protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 220 KYN*KDVAKCLVTETCLRAVKQAQREGSNKVDVEHIEKCLPQLML 354
           KY  KD   C V+ +  RA   ++++  N  D +++E C+  L L
Sbjct: 140 KYEKKDQG-CTVSYSDNRASSDSRKKEINVTDEDYVELCIKDLKL 183


>AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical
           protein ZK973.1 protein.
          Length = 745

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +2

Query: 161 ARNIKDNNNIDPATLLSNVKSTIKKMWPNVWSPRHACVQSNKHRERVLTKLM*NILRNVY 340
           A++I D N +D  +LLSN   T+K    +V      C+    +R+  + K+  NI  ++ 
Sbjct: 143 AQSILDGNFVDFKSLLSNGLKTVK----DVEEHLKICLADLINRDEEVRKVSANI--DIL 196

Query: 341 PS*CWTSLKLIKMLQMEKK 397
              C  S KL +  +  +K
Sbjct: 197 KKECRVSAKLSREAEKNRK 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,007
Number of Sequences: 27780
Number of extensions: 152005
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)