Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c12
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    27   0.079
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.1  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 0.079
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 158 MARNIKDNNNIDPATLLSNVKSTIKKMWPNVWSPRHA 268
           + RN++ ++ +D  TLL++   +IK    + W PRHA
Sbjct: 146 LIRNLRQSSALDGVTLLADNSVSIK----DPWFPRHA 178


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 149 TTAMARNIKDNNNIDPATLLSNVKST 226
           T + +   +D   +DP  ++SN KST
Sbjct: 430 TASGSNEDEDETPLDPVVVISNDKST 455


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 73  YNNCYTNTIL*FYTNCILL*NIP 141
           YNN Y N     Y N I +  IP
Sbjct: 343 YNNNYNNNCKKLYYNIINIEQIP 365


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 291 LCLFDCTQACLGDQTFG 241
           L LF CT +C+    +G
Sbjct: 301 LFLFACTNSCMNPIVYG 317


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +3

Query: 117  LYFALKYSEIEQQQW 161
            +YF +++ +  QQ+W
Sbjct: 1492 IYFVVEHKKKNQQEW 1506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,921
Number of Sequences: 438
Number of extensions: 1834
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)