Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c10
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    83   3e-17
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.6  
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    26   6.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   7.9  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
 Frame = +1

Query: 271 VVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDP---LPEVLNNPHITVIKLHPFEL 441
           V+VLGDI RSPRMQYHA+S A  G  V ++ Y        L E   N     I   P  L
Sbjct: 29  VLVLGDIARSPRMQYHAVSFAKLGWKVDLLGYQHPGSSVGLFESHENIRFYPIPSLPAYL 88

Query: 442 K-WGPVVLKYIA--KTLWQSVSLMFTLFLTGRCDYLLGQNPPAIPSLPVFRLYCMVSKAQ 612
           +    +   ++   K L Q ++L + LF+     +L  QNPP IP   + +   ++   +
Sbjct: 89  QPKNRLQFLFLGPLKVLHQFLALNWALFVRKPASFLFIQNPPCIPVFFIAQCLHILRGTK 148

Query: 613 FVIDWHNYAYSIMAMTLEPDHMLVRMAR 696
           F+IDWHN+ YSI+A+ L   H  V++ +
Sbjct: 149 FIIDWHNFGYSILALKLGKQHTFVKLLK 176


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 316 HALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 435
           H   L++  LD   I  +E  PLP V  N HI   +L  F
Sbjct: 359 HLPLLSDEKLDKSAIDKIEPTPLPSVHMNSHIAKGELPKF 398


>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 611 WAFETMQYKRKTGKDGMAGGFWPNK*SHL 525
           ++FE +++K+    DG    FW +K +HL
Sbjct: 97  YSFENLRFKKYPWGDGSKTLFWNDKVNHL 125


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 454 VVLKYIAKTLWQSVSLMFTLFLTGRCDYLLGQNPPAIPSL 573
           VV+    + L     L + L L G+C+Y++  +PP+   L
Sbjct: 170 VVVTSFERDLIPFHELYYKLALEGKCNYVIRYSPPSSSKL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,449
Number of Sequences: 5004
Number of extensions: 65769
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)