Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c10
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 103 1e-22
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 97 9e-21
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 29 2.7
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 28 6.2
12_02_0115 - 13809015-13809068,13809530-13809637,13811004-138111... 28 8.2
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 28 8.2
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117... 28 8.2
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 103 bits (248), Expect = 1e-22
Identities = 57/150 (38%), Positives = 92/150 (61%), Gaps = 5/150 (3%)
Frame = +1
Query: 256 RKVAKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITVIKLHP 432
RK A VVVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++
Sbjct: 10 RKRAAVVVLGDIGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKS 69
Query: 433 FELKWGPVV---LKYIAKTLWQSVSLMFTL-FLTGRCDYLLGQNPPAIPSLPVFRLYCMV 600
+L + L + K Q + L++ L F R D + QNPP++P+L +L +
Sbjct: 70 VQLTGILKISGALTLLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASWL 129
Query: 601 SKAQFVIDWHNYAYSIMAMTLEPDHMLVRM 690
A+F++DWHN+ Y+++ ++ H++V++
Sbjct: 130 RGAKFIVDWHNFGYTLLGLSHGRSHIIVKI 159
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 97.5 bits (232), Expect = 9e-21
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Frame = +1
Query: 256 RKVAKVVVLGDIGRSPRMQYHALSLAN-NGLDVKIISYVETDPLPEVLNNPHITVIKLHP 432
R+ A VVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++
Sbjct: 10 RRRAAAVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKS 69
Query: 433 FELKWGPVV---LKYIAKTLWQSVSLMFTL-FLTGRCDYLLGQNPPAIPSLPVFRLYCMV 600
+L + L + K Q + L++ L F R D + QNPP++P+L +L +
Sbjct: 70 VQLTGISKISGALSMLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASGL 129
Query: 601 SKAQFVIDWHNYAYSIMAMTLEPDHMLVRM 690
A+ ++DWHN+ Y+++ ++ H++V++
Sbjct: 130 RGAKSIVDWHNFGYTLLGLSHGRSHIIVKI 159
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 391 VLNNPHITVIKLHPFELKWGPVVLKYIAKTL 483
VLN P TV LHPF +K+G ++ TL
Sbjct: 146 VLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176
>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 436 ELKWGPVVLKYIAKTLWQSVSLMFTLFLTGRCDYLLGQNPPAIPSL 573
+ K G K+ W+ V+ ++ FL G C +L + P++ S+
Sbjct: 1243 DCKSGMSSYKFSRARFWKEVADVYETFLVGSCGRVLSSDVPSVDSV 1288
>12_02_0115 -
13809015-13809068,13809530-13809637,13811004-13811114,
13811891-13811988,13813448-13813563,13814201-13814433,
13816015-13816212,13820448-13820572,13820700-13820787,
13822227-13822332,13823243-13823331,13823427-13823570,
13824174-13824266,13824442-13824508,13825251-13825387,
13825471-13825566,13826322-13826600
Length = 713
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 591 IQTKDWQGWYGGW 553
I T+DW GWY W
Sbjct: 294 IWTEDWDGWYADW 306
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = +2
Query: 542 WARTHPPYH--PCQSFVC 589
WARTH PY P Q F C
Sbjct: 496 WARTHQPYRYIPVQEFAC 513
>05_05_0103 -
22408832-22410041,22410500-22410628,22411600-22411703,
22411780-22411874,22412483-22412540,22412741-22412792,
22415399-22415532
Length = 593
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 366 RRDRPTP*SPKQPAYYRHKTSSFRTEMGPCSTQIHCQNFMAECKLNVYPI 515
+RD+PTP R + F T +G C+T Q+F L++ P+
Sbjct: 451 KRDKPTPAEDNDLKIGRLSSDDFHTPIGKCTTD-SPQSFKTAALLSLGPM 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,540,481
Number of Sequences: 37544
Number of extensions: 426619
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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