Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c10
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...   101   5e-22

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score =  101 bits (242), Expect = 5e-22
 Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
 Frame = +1

Query: 256 RKVAKVVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 435
           R  A VVVLGD+GRSPRM  HA  LA+ G DVK+I + ++ P  +++N+P I ++ + P 
Sbjct: 12  RSEAAVVVLGDVGRSPRMCNHAKMLADEGFDVKLIGFFDSIPGEQIMNHPRIKIVGIPPP 71

Query: 436 E--LKWGPVVLKYIAKTLWQSVSLMFTL-FLTGRCD--YLLGQNPPAIPSLPVFRLYCMV 600
              +   P  ++   K  W  ++L   L F T   +   +L QNPPA+P++ V  ++ + 
Sbjct: 72  PDFMDSLPAFVQLPLKLFWNFITLFLALAFQTSAFNLRIILMQNPPALPTMIVCFMFSIF 131

Query: 601 SKAQFVIDWHNYAYSIM 651
             A+F IDWHNY YSI+
Sbjct: 132 KFAKFSIDWHNYMYSIL 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,584
Number of Sequences: 27780
Number of extensions: 370737
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)