Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c10
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 525 KVRLFVGPEPTRHTILASLS 584
           KV + +GPE +RHT L  L+
Sbjct: 72  KVLVPLGPETSRHTTLGLLT 91


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 319 ALSLANNGLDVKIISYVETDPLPE 390
           A ++A  GLD+K +S+V    LP+
Sbjct: 507 ATAVAARGLDIKNVSHVINYDLPK 530


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 319 ALSLANNGLDVKIISYVETDPLP 387
           ALSL +  L    + ++E +P P
Sbjct: 681 ALSLGSEALSAATVRFIEAEPQP 703


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 556 PAIPSLPVFRLYCM 597
           P IP LP+  +YC+
Sbjct: 783 PRIPILPMIPVYCV 796


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,583
Number of Sequences: 438
Number of extensions: 5357
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)