Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c09
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 31 0.24
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.72
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 28 1.3
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 28 1.7
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 2.9
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 27 2.9
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 26 5.1
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 26 5.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 6.7
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 30.7 bits (66), Expect = 0.24
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = +1
Query: 418 PFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSLKWKLKLYSIQQYG*FSN 597
P + + + ++K+RNL + R DT +++ E+ M + + + K+YSI + + +
Sbjct: 45 PVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMNAEQTRQKIYSIHIHSPW-D 103
Query: 598 YLEHQELTSFFLPLVFQYIS*NFIAFDTDSLSSAVHYPLHRLHTKN 735
LE + + + P Y N +A + S V+ RL N
Sbjct: 104 QLELDKKSLYEQPHTKLYNGQNVVASIENGYQSNVYEFQLRLMKNN 149
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 29.1 bits (62), Expect = 0.72
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 374 VNSSTNCPPVCRSEGLALSTSPSLP 300
+ SS N P+CR++G+A +++PS P
Sbjct: 557 LTSSQNSCPLCRTKGVASASTPSSP 581
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 592 SNYLEHQELTSFFLPLVFQYIS*NFIAFDTDSLSSAVHYPLHRLH 726
SN++E + T+F + L + + F+++ D L+ V H LH
Sbjct: 131 SNFIELSQFTAFEVELRVSHPNWAFVSWSHDDLNELVDKSYHNLH 175
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 324 AFHVAIAAHVHGVPSPGQLLIR-NQARVVECVVL 226
AF + + VH P PG +L+R NQA + + V+L
Sbjct: 331 AFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVIL 364
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 361 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 522
V +L +E+D+ Q + P + + EN+K + + +G + NP +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = +1
Query: 310 GDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANG 489
G++ + Q G +F+ R + + APP + + S +
Sbjct: 187 GEILRRKDMLEQLGSEFLS-FKRLV--KNANSPVAPPSASSQLNSSNPSSPFRPLSASTD 243
Query: 490 RQSDTNPNFIY*ENRMKSLKWKLKLYSIQQYG*FSNYLEHQEL-TSFFLPLV 642
+QS+T+ N + +NRM + KL ++ Y + +E Q++ LP++
Sbjct: 244 KQSNTSLNRVLGKNRMPETQTTKKLDNVGLYNMQNQTMEDQDMQAESLLPII 295
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/44 (20%), Positives = 19/44 (43%)
Frame = -1
Query: 194 IRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLTIMIVSN 63
+ P C + T+ + H+T + + H +LN ++ N
Sbjct: 342 VNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKN 385
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 354 PTRLPLRRSGAFHVAIAAHVHGVP 283
P LPL++ GAFH+A+ A V +P
Sbjct: 190 PCLLPLKK-GAFHLAVQAQVPIIP 212
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 170 STLRLMEATLAHST-TAITNTTSHAQLNTLTIMIVSNSIVLNDRSHV 33
ST M T++H+T T+ + TTSH NTL ++ + + S V
Sbjct: 3716 STGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGV 3762
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +1
Query: 322 SARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 456
++RPS + ++ +T +D+R+++ P SI E +++
Sbjct: 919 ASRPSLSRRRNDYINNVTSWLDERREKMGVVRPRASTSILETRRR 963
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,751
Number of Sequences: 5004
Number of extensions: 74860
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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