Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c09
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 31 1.3
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 31 1.3
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 30 1.7
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658... 30 1.7
12_01_0634 - 5264012-5264259,5264865-5265085,5265912-5266120,526... 30 2.3
09_04_0583 - 18699265-18699459,18701579-18701827,18703283-187036... 30 2.3
11_04_0180 + 14565328-14566226,14566377-14566644 29 3.0
11_04_0024 - 12376642-12377362,12377614-12377849 29 3.0
12_02_0352 - 17862577-17863528,17864076-17864827 29 4.0
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 29 4.0
08_02_0122 + 12805419-12805438,12805842-12805989,12806155-128063... 29 4.0
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 4.0
05_04_0388 - 20841566-20841667,20841861-20842031 29 5.3
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 5.3
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 29 5.3
10_08_0067 + 14620852-14621454 28 7.0
05_04_0382 + 20796567-20796810,20796894-20797750 28 7.0
05_03_0478 - 14526180-14526578 28 7.0
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081... 28 7.0
09_01_0121 - 1851777-1852039,1856499-1856703 28 9.3
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635... 28 9.3
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 9.3
05_06_0204 + 26354319-26356967 28 9.3
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 9.3
04_04_1377 - 33064906-33065607 28 9.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 9.3
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 28 9.3
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 28 9.3
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 28 9.3
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 28 9.3
01_06_0437 + 29358061-29358154,29358265-29358323,29358559-293587... 28 9.3
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 268 PHQE--PGPGCGMRGSYLNSFSVFEPSSV 188
PHQE P PGCG S+ N S FE S V
Sbjct: 808 PHQESHPTPGCGTELSHKNDTSGFERSDV 836
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 280 RGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKS 459
+GY MY G GD+ + RP++R+ ++ T E ++ + R + P L++ + K++
Sbjct: 516 QGYRMYYGG-GDLPTIRPNKRRLASILLKNATMEWNEFETRLCSHPRHSLRTDDTPTKEN 574
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 132 HHCHHEHNQPCAAEHAHYYDRFQL 61
HH HH H+ P +H H++ QL
Sbjct: 63 HHHHHHHHPPPRVQHHHHHHHQQL 86
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 144 PRAQHHCHHEHNQ 106
PR QHH HH H Q
Sbjct: 73 PRVQHHHHHHHQQ 85
>01_06_0356 +
28662956-28664043,28664255-28665139,28665227-28665840,
28665929-28666338
Length = 998
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = -1
Query: 377 LVNSSTNCPPVCRSEGLALSTSPSLPTYMEYPRLDNSSSGT-RPGLWNAWFLSEFIFSF* 201
L ++ T P C G++ +S T +E+ D + GT P + N FLS + S
Sbjct: 47 LASNWTASAPFCSWIGVSCDSSGKWVTGLEFE--DMALEGTISPQIGNLSFLSSLVLSNT 104
Query: 200 TLIRPVACMSSTL-RLMEATLAHSTTAITNTTSHAQLNTLTIMIVSNS 60
TLI PV L RL L++++ + T + L L + ++++
Sbjct: 105 TLIGPVPTELDRLPRLQTLVLSYNSLSGTIPSILGNLTRLESLYLNSN 152
>12_01_0634 -
5264012-5264259,5264865-5265085,5265912-5266120,
5266133-5266677,5266717-5266849,5266957-5267262
Length = 553
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +1
Query: 208 LKMNSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREID 387
LK +D + + PG + L GY +Y + + E + GG + E +
Sbjct: 477 LKYGADGSLIYFFPGCTNEIPLPNTGYRLYNCQELTIPLQTIEESRAGGTYRETSNKARQ 536
Query: 388 QRQQRQSTAP 417
+R++ S+ P
Sbjct: 537 EREESSSSTP 546
>09_04_0583 -
18699265-18699459,18701579-18701827,18703283-18703669,
18703793-18703870,18704082-18704141,18704299-18704343,
18704506-18704718,18704867-18704932
Length = 430
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 204 LNPHPSGGLHVVYSPPDGGDPRAQHHCHHEHNQPCAA 94
+ P P G + +V SP G A+ HH H+Q AA
Sbjct: 17 VEPSPKGEISLVLSPAAVGTKMARSPDHHHHHQQQAA 53
>11_04_0180 + 14565328-14566226,14566377-14566644
Length = 388
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = +1
Query: 64 LETIIIVSVFSCAWLVVFVMA--VVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHA 237
LE I + C L+ + VV+ ++A I + T ++ LK D +
Sbjct: 178 LENIKFSAPVECTSLITRIAKGLVVISDQIAFISAACPCIDETYLVQGHILKHGEDGSLI 237
Query: 238 FHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTA 414
+ PG + + L GY +Y + + E + GG + E TR + + +Q S++
Sbjct: 238 YFFPGCINEIPLPNAGYHLYNCRELTIPLHTIEESRAGGAYRE--TRNMARNEQGSSSS 294
>11_04_0024 - 12376642-12377362,12377614-12377849
Length = 318
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +1
Query: 208 LKMNSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREID 387
LK D++ + PG + L GY +Y + + E +TGG + E +
Sbjct: 128 LKHGVDRSLIYFFPGCTNEILLPNAGYHLYNCRELTIPLQTIEESRTGGAYRETRNMTRN 187
Query: 388 QRQQRQSTAPPFLLQS 435
+R+ S+ P L ++
Sbjct: 188 ERESSSSSTPVQLYEA 203
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 306 RWRRGKRQTFGAADGWAVRRRVN*RDRPEAAEAVDRPAFP 425
RWRR ++ DG RRR R + A AV R +FP
Sbjct: 67 RWRRRLKRATEECDGALRRRRRKQRAVEDEAAAVSRSSFP 106
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -3
Query: 198 PHPSGGL---HVVYSPPDGGDPRAQHHCHHEHN--QPCAAEHAH 82
P P GG H+ + PP + QH H H+ QP AA H
Sbjct: 297 PFPGGGKDESHLFHLPPAAAAKQPQHMDEHHHHQQQPMAAPQQH 340
>08_02_0122 +
12805419-12805438,12805842-12805989,12806155-12806380,
12806501-12807117
Length = 336
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/103 (19%), Positives = 43/103 (41%)
Frame = +1
Query: 109 VVFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAFHNPGLVPDEELSRRGY 288
++ + A+V ++A ++ + T ++ LK D + + PG + L GY
Sbjct: 115 LIIMFAMVRKIKIAPVKSARPCIDETYLVQGHILKHGVDGSLIYFFPGCTNEIPLPNAGY 174
Query: 289 SMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAP 417
+Y + + E + GG + E ++R+ S+ P
Sbjct: 175 HLYNCHELTISLQTIEEFRVGGAYRETRNMTRNERESSSSSTP 217
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 60 GVGNDHNSERVQLRMAGCVRDGSGAVREGRLHQAESRRHAGHRTDEG 200
G+G H + G D S R+ RL SRR A HR D+G
Sbjct: 58 GIGGSHGLHKSGTATTGLPFDISWR-RQDRLQIVVSRRRAAHRLDDG 103
>05_04_0388 - 20841566-20841667,20841861-20842031
Length = 90
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 342 PLRRSGAFHVAIAAHVHGVPSPGQLLIRNQARVVEC 235
PLRRS F ++++ H +P PG L AR C
Sbjct: 13 PLRRSRLFVISLSDHATPLPVPGSWLGATGARGTGC 48
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 46 SFNTME-LETIIIVSVFSCAWLVVFVMAVVLCAR 144
+F+ M+ L TI+I+S S L++F+ ++++C R
Sbjct: 734 TFSVMQFLGTILIISYVSWPVLIIFIPSILICIR 767
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 150 GDPRAQHHCHHEHNQPCAAEHAHYYDR 70
G P Q H HH+ Q A H Y R
Sbjct: 25 GPPLQQQHNHHQQQQTSAPHHQQYVQR 51
>10_08_0067 + 14620852-14621454
Length = 200
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 300 GQRWRRGKRQTFGAADGWAVRRRVN*RDRPEAAEAVD 410
G R RRGKR++ G+ G RR + RDR A D
Sbjct: 159 GDRRRRGKRESGGSRRGLDSGRREHHRDRGNAFPTSD 195
>05_04_0382 + 20796567-20796810,20796894-20797750
Length = 366
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 192 PSGGLHVVYSPPDGGDPRAQHHCHH 118
PS H Y+PP QHH HH
Sbjct: 157 PSTSRHAGYAPPASHHHLLQHHLHH 181
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 105 AGCVRDGSGAVREGRLHQAESRRHAGHRTDEGSKTENEFR*EPR 236
+GCV G R R + + R+H G+R E+ R PR
Sbjct: 46 SGCVSSGGSWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPR 89
>01_05_0606 -
23607170-23607568,23607738-23607941,23608035-23608113,
23608371-23608430,23608514-23608611,23608703-23608891,
23610670-23611368
Length = 575
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 177 HVVYSPPDGGDPRAQHHCHHEHNQPCAAEHA 85
H V GGD R QHH HH+ + A+ A
Sbjct: 9 HGVRHGGGGGDARKQHHHHHQLSHGFGAKDA 39
>09_01_0121 - 1851777-1852039,1856499-1856703
Length = 155
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 294 VRGQRWRRGKRQTFGAADGWAVRRRVN*RDRPEAAEAVDRPAFPAAKHRRKQEEEQEPLQ 473
V + + +R+ A A++ N D P + A +K R K EQE +
Sbjct: 94 VNEEEQQNAERRNKQAFPTKALKTNENITDEPNESSATI-----VSKLRHKSRHEQEDCE 148
Query: 474 SYRKWTP 494
+RKW P
Sbjct: 149 GFRKWLP 155
>08_02_1457 +
27260841-27260965,27261126-27261246,27263455-27263543,
27263776-27263860,27263970-27264074,27264446-27264527,
27264573-27264686,27265029-27265330,27265519-27266114,
27266216-27266376,27266489-27266592,27266697-27266856,
27266942-27267105,27267213-27267545,27267640-27267930,
27268276-27268359,27268430-27268563,27268665-27268892,
27268993-27269164,27269263-27269517,27269778-27270047
Length = 1324
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 340 RQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNP 477
R+ F++E+T ++DQ+Q A + SIE+ + R Y P
Sbjct: 332 RKNVADFLQEVTSKMDQKQYWIGNANKYQYHSIEKFAESFRTSYLP 377
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -3
Query: 186 GGLHVVYSPPDGGDPRA---QHHCHHEHNQPCA 97
G +++ PP PR QHH HH H+ A
Sbjct: 30 GFFNILVPPPQSPRPRCPDHQHHHHHHHHHDAA 62
>05_06_0204 + 26354319-26356967
Length = 882
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +1
Query: 250 GLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLL 429
GL+ D ++ MY S+G VES R S+ + E +QR R ST L
Sbjct: 705 GLISDVYVANALVGMYKKSEGWVESKRNSKETLAPEQDAEDNCYSEQRDIR-STLEEIGL 763
Query: 430 QSIEENKKK 456
++EE K K
Sbjct: 764 FTLEEEKDK 772
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -3
Query: 201 NPHPSGGLHVVYSPPDGGDPRAQHHCHHEHNQPCA 97
+PHP H + P P HH H H P A
Sbjct: 53 HPHPPHHPHPPHHPHPPHHPHPPHHHPHPHPDPAA 87
>04_04_1377 - 33064906-33065607
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 132 HHCHHEHNQPCAAEHAHYYDR 70
HH HH H QP E H++++
Sbjct: 185 HHHHHPHLQPHGEEQHHHHEQ 205
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 201 NPHPSGGLHVVYSPPDGGDPRAQHHC 124
NPHPS G +PPDG PR C
Sbjct: 2342 NPHPSMG-----APPDGKQPRRLRRC 2362
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 150 GDPRAQHHCH-HEHNQPCAAEHAHYYDR 70
G P +QH H H+H QP H Y R
Sbjct: 25 GPPPSQHQQHQHQHQQPPHPHHHQYVQR 52
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 139 ARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDV 318
A +++ R R+D+ R LK D + + PG + L GY +Y + +
Sbjct: 1088 AFISAARPRIDEAYLVQR---HILKRGVDGSLVYFFPGCTNEIPLPNAGYHLYNCHELTI 1144
Query: 319 ESARPSERQTGGQFVEELTREIDQRQQRQSTA 414
E + GG + E TR + + +Q S++
Sbjct: 1145 PLQTIEESRAGGTYRE--TRNMTRNEQGSSSS 1174
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = -3
Query: 159 PDGGDPRA--QHHCHHEHNQPCAAEHAHYYDRFQ 64
PD PR HH HH A H H++ + Q
Sbjct: 183 PDLSSPRQLLPHHHHHHPGSSAALYHGHHHQQLQ 216
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +1
Query: 205 KLKMNSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREI 384
++K S+K+H +N + D+ GYS Y D E + E Q +
Sbjct: 232 RVKAISEKHHIDYNFSGLEDDGSDNDGYSTYDSCSDDGELSFDYEINDRDQDFLTSRGSM 291
Query: 385 DQRQQRQSTAPPFLLQSIEENKKKS 459
D + Q+T+P + ++ +E K++
Sbjct: 292 DFDKSDQTTSPKPIKENKQEEAKQA 316
>01_06_0437 +
29358061-29358154,29358265-29358323,29358559-29358747,
29359938-29360108,29360238-29360252
Length = 175
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 307 DGDVESARPSERQTGGQFVEELTREID-QRQQRQSTAPPFLLQSIEENKKKSRNL 468
DG+ + + SE Q+G + E L R++D + + Q + LL + E K NL
Sbjct: 30 DGEKKKQKLSEIQSGVEEAESLIRKMDLEARSLQPSVKAGLLAKLREYKSDLNNL 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,511,937
Number of Sequences: 37544
Number of extensions: 557989
Number of successful extensions: 1921
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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