Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c09
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    30   2.1  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    30   2.1  
Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical
           protein C30C11.4 protein.
          Length = 776

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
 Frame = +1

Query: 160 RRVDDMQATGRMRVQKLKMNSDKNHAFHNPGLVPDEELSR--RGYSMYVGSDGDVESARP 333
           +R+ +++A G   V++ + +  +  AF +     D+ + R  + Y  Y            
Sbjct: 632 KRLSELKAVGTPVVERYRESETRKPAFDSF----DQSIMRVRKAYEDYANGGPTYAHLDS 687

Query: 334 SERQTGGQFVEELTREIDQRQQRQST-----APPFLLQSIEENKKKSRNLYNPTANGRQ 495
            E +     +E+  + +D+ + +Q T     AP    + I +NK    N+ NP  N ++
Sbjct: 688 KEMEKVINAIEDKKKWLDEARHKQETRSKTDAPVVFTEEILQNKNVFENVVNPILNKKK 746


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 112 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 285
           +FV A + CA   +  RR++D+ A+   R+  +  + + NH         P+ ++ R G
Sbjct: 43  LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 101


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 112 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 285
           +FV A + CA   +  RR++D+ A+   R+  +  + + NH         P+ ++ R G
Sbjct: 65  LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 123


>Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical
           protein T01E8.6 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 288 LHVRGQRWRRGKRQTFGAADGWAVRRRVN*RDRPEAAEAVDRPAFPAAKH-----RRKQE 452
           L+V  + W+ GKR TF A+  W   R V  R++ +   A DR    A K      +  ++
Sbjct: 84  LYVEREWWKTGKRMTFWAS--WRQLRDVKRREQIQEVGA-DRMRLKAIKFNTILPQAIRD 140

Query: 453 EEQEPLQSYRKWTPKR 500
           E  E +Q  RK+   R
Sbjct: 141 EAAEKMQKARKYDHPR 156


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +1

Query: 319 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSR 462
           E  +P++ +   + +E L +E ++R +  +  PP +LQS+ E  +  +
Sbjct: 222 EPVKPADLEMDAE-IERLIKEEEERMKNVAEQPPLVLQSLPETPEAQK 268


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +1

Query: 319 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSR 462
           E  +P++ +   + +E L +E ++R +  +  PP +LQS+ E  +  +
Sbjct: 222 EPVKPADLEMDAE-IERLIKEEEERMKNVAEQPPLVLQSLPETPEAQK 268


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 144 PRAQHHCHHEHNQPCAAEHAHY 79
           P A  H HH H+Q    +H HY
Sbjct: 44  PTAPPHHHHHHHQHQPQQHLHY 65


>Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical
           protein C29F4.2 protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +1

Query: 274 SRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKK 453
           ++R  + Y GS  + ++  P + +        L  ++DQ   +++  PP  +QS+ E K+
Sbjct: 351 AQRNVNFYFGSATNADAQIPDDVRQITMIPHPLNEKLDQMYGKRTNRPP--VQSVVELKR 408

Query: 454 KSRNLYNPTANGRQSDTNPNF 516
             R     T N R+      F
Sbjct: 409 DQR---FSTGNNRKQTLEAKF 426


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 135  QHHCHHEHNQPCAAEHAHYY 76
            QHH HH H     +EH H+Y
Sbjct: 946  QHH-HHHHYHTDGSEHVHHY 964


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
           protein T23F2.2b protein.
          Length = 1538

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 331 PSERQTGGQFVEELTREIDQRQQR--QSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 504
           P  R +  +F E+ T  I + Q    +  A  F+ ++ +EN   S +L     NGR+ + 
Sbjct: 51  PGFRPSPDRFPEKGTTRIPKLQVTWWEKNAVAFIGETSDENNTDSEHLMRDLGNGRREEE 110

Query: 505 NP 510
            P
Sbjct: 111 KP 112


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
           protein T23F2.2a protein.
          Length = 1534

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 331 PSERQTGGQFVEELTREIDQRQQR--QSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 504
           P  R +  +F E+ T  I + Q    +  A  F+ ++ +EN   S +L     NGR+ + 
Sbjct: 51  PGFRPSPDRFPEKGTTRIPKLQVTWWEKNAVAFIGETSDENNTDSEHLMRDLGNGRREEE 110

Query: 505 NP 510
            P
Sbjct: 111 KP 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,173,372
Number of Sequences: 27780
Number of extensions: 443763
Number of successful extensions: 1604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)