Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4c08
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    30   0.28 
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    30   0.37 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   2.0  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   4.5  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    25   7.9  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 479 SSLTEYLAGTSAFSMFFISHSSVPMEAYDYSSIPY 375
           S++  Y    +  S++F++HS VP+     S IPY
Sbjct: 82  SNVQSYFRYYNYISLYFVTHSKVPLNRLPNSMIPY 116


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 451 VPARYSVNEESYPSTVLLINTVMELLSL*TDAGSTEENTQKKLTRRNKKRRGV 609
           VPAR   N  +YP  V L NT++ L S     G   EN  +++ +  +K+ G+
Sbjct: 104 VPARLPENPPAYPKGV-LGNTILPLHSPALSGGGISENMFQEMMQEMQKQPGL 155


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +2

Query: 338 RDSRWQAFSQKNHTEYYCNHMLPSAQKNEK*RT*KTQRFPPDILLMKRAIRRQYC**TLS 517
           R+ RW+ F Q+N  +Y   H  PS   +   R+ KTQRF      +++ I  +Y      
Sbjct: 263 REQRWKLFLQENGIDYI--HQSPSIFPS---RSAKTQRF------IRKGIPPEYRGNAWF 311

Query: 518 WSCSLYERMQARPK 559
           +    YE +Q  PK
Sbjct: 312 YYSGGYELLQRNPK 325


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 410 PMEAYDYSSIPYGFSGKMPAILNHVFNSMLRG--LPAN--NHVTNHSRDQRLIICANVQS 243
           P +    SS PYG    +     H   + + G   P N  N++T   R+ RLII  + ++
Sbjct: 74  PADVCVISSRPYGHRAVLK-FAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRA 132

Query: 242 YTFAIKEKATKN 207
              AIKE +  N
Sbjct: 133 DAQAIKEASFVN 144


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 216 NEK*PLKSESPRSAHIQFKKKTLNL-TRLNYCND 118
           N+  PL++E+  SAH  +   TLNL + LN   D
Sbjct: 261 NDLQPLQAEAFHSAHNGYSSSTLNLNSELNVMKD 294


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 301 LLAGSPRSIELNT*FKMAGIFPEKPYGILL*SYA 402
           LL GSP +I+L    ++ G+F  +   +L  SYA
Sbjct: 397 LLVGSPTAIQLTQICQLNGVFERECAKVLWWSYA 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,170
Number of Sequences: 5004
Number of extensions: 45684
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)