Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c04
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 53 2e-07
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 38 0.007
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 33 0.20
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 25 1.4
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 1.4
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 27 1.4
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 4.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 25 5.2
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 25 5.2
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 9.8
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 9.8
AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical ... 27 9.8
AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical ... 27 9.8
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 27 9.8
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 27 9.8
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 52.8 bits (121), Expect = 2e-07
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 2/178 (1%)
Frame = +2
Query: 173 IHVSNHSRCINNISASTSKTELECEFPPKMEEDLSHVRRKRLTTETGLVCLEDYPYTVSV 352
+ N + I + T +E +E +V +P+TV +
Sbjct: 16 VSTDNKNDVIEKVGCGLHSTNVELAQTRSAQEPADYVTLDHRLIGGSESSPHSWPWTVQL 75
Query: 353 RLH-GKHWCGGAIVSKQWVLTAAQCFDYVTK-DEVSVRMGSVFRDFGGRILSVLDVRRHP 526
G H CGG+++ +VLTAA CF + SVR+G R G V V HP
Sbjct: 76 LSRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG-HRSGSGSPHRVTAVSIHP 134
Query: 527 DYRVDQYYPEHNLAMVKVNLPIAANSRMQAVPLPEPDADLPLKFGETVVTGFGSVKSG 700
Y + + ++ A+++++ P+ ++ + + LP A ++ VVTG+GS G
Sbjct: 135 WYNIG-FPSSYDFAIMRIHPPVNTSTTARPICLPSLPA---VENRLCVVTGWGSTIEG 188
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 37.9 bits (84), Expect = 0.007
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Frame = +2
Query: 332 YPYTVSVRLHGK--HWCGGAIVSKQWVLTAAQCF---DYVTKDEVSV-RMGSVFRDFGGR 493
+P+T ++R H CG +I+ K ++TAA CF + V+ EV V + D +
Sbjct: 38 FPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQ 97
Query: 494 ILSVLDVRRHPDYRVDQYYPEHNLAMVKVNLP-IAANSRMQAVPLPEPDADLPLKFGETV 670
I + + +P Y+ D + H++A++++ P I N Q + LP D + + V
Sbjct: 98 IFYLQRIHFYPLYK-DIF--SHDIAILEIPYPGIEFNEYAQPICLPSKDF-VYTPGRQCV 153
Query: 671 VTGFGSV 691
V+G+GS+
Sbjct: 154 VSGWGSM 160
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 33.1 bits (72), Expect = 0.20
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +2
Query: 374 CGGAIVSKQWVLTAAQC-FDYVTKDEVSVRMGSVFRDFGGRILSVLDVRRHPDYRVDQYY 550
CG ++ W++TAA C T+ V VR R+ R SV + H Y +
Sbjct: 66 CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRE---RSFSVKEAYIHSGY--NNQT 120
Query: 551 PEHNLAMVKVNLPIAANSRMQAVPLPEPDADLPLKFGETVVTGFG 685
++++A+++++ + + ++ V L D+ L ++ VV G+G
Sbjct: 121 ADNDIALLRISSDL-SKLGIKPVCLVHDDSKLLKQYKNGVVIGYG 164
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 24.6 bits (51), Expect(2) = 1.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -2
Query: 542 GRPCSPGVSARPARTGSDPRSLGTLI---PCERTPR 444
GRP PGV+ P G P++ I PC+ P+
Sbjct: 113 GRPGKPGVAGLPGNPGRPPQAPCDPITPPPCKPCPQ 148
Score = 24.2 bits (50), Expect(2) = 1.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 347 KQCTDNPPGTQGP 309
K C PPG QGP
Sbjct: 144 KPCPQGPPGVQGP 156
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 26.6 bits (56), Expect(2) = 1.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 542 GRPCSPGVSARPARTGSDPRSLGTLIPCERTP 447
G+P +PG++ P R +P T PC+ P
Sbjct: 108 GKPGAPGLNGNPGRPPKEPCEPITPPPCKPCP 139
Score = 22.2 bits (45), Expect(2) = 1.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 347 KQCTDNPPGTQGP 309
K C + PPG GP
Sbjct: 136 KPCPEGPPGPAGP 148
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 26.6 bits (56), Expect(2) = 1.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 542 GRPCSPGVSARPARTGSDPRSLGTLIPCERTP 447
G+P +PG++ P R +P T PC+ P
Sbjct: 110 GKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCP 141
Score = 22.2 bits (45), Expect(2) = 1.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 347 KQCTDNPPGTQGP 309
K C + PPG GP
Sbjct: 138 KPCPEGPPGPAGP 150
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 323 LEDYPYTVSVRLHGKHWCGGAIVSKQWVLTAAQCF 427
++++P+ VS + G + GG+I+S ++TAA F
Sbjct: 25 IKNFPWAVSFTVDGVNRLGGSIISPYHIITAAHGF 59
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +2
Query: 335 PYTVSVRLHGKHW-----CGGAIVSKQWVLTAAQCF 427
P+ V +R+ + CGG +++ + VLTAA CF
Sbjct: 44 PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCF 79
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 25.4 bits (53), Expect(2) = 5.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 542 GRPCSPGVSARPARTGSDPRSLGTLIPCERTPR 444
G+P +PG+ P R P T PC+ P+
Sbjct: 118 GKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQ 150
Score = 21.4 bits (43), Expect(2) = 5.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -2
Query: 347 KQCTDNPPGTQGP 309
K C PPG GP
Sbjct: 146 KPCPQGPPGPPGP 158
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 25.4 bits (53), Expect(2) = 5.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 542 GRPCSPGVSARPARTGSDPRSLGTLIPCERTPR 444
G+P +PG+ P R P T PC+ P+
Sbjct: 118 GKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQ 150
Score = 21.4 bits (43), Expect(2) = 5.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -2
Query: 347 KQCTDNPPGTQGP 309
K C PPG GP
Sbjct: 146 KPCPQGPPGPPGP 158
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 70 WPGHAGPCSSKSIVTSCMQQVM 135
WP H+G CS I T C +M
Sbjct: 1276 WPNHSGRCSFARINTLCKDVIM 1297
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 70 WPGHAGPCSSKSIVTSCMQQVM 135
WP H+G CS I T C +M
Sbjct: 1317 WPNHSGRCSFARINTLCKDVIM 1338
>AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical
protein F29G9.2b protein.
Length = 525
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 250 SSEDGGGPQSREEEEAHHRDGPC 318
SSE GG + +EE HH C
Sbjct: 253 SSEQSGGSEGHNDEEKHHEFNKC 275
>AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical
protein F29G9.2a protein.
Length = 535
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 250 SSEDGGGPQSREEEEAHHRDGPC 318
SSE GG + +EE HH C
Sbjct: 263 SSEQSGGSEGHNDEEKHHEFNKC 285
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 314 LVCLEDYPYTVSVRLHGKHWCGGAIVSKQWVLTAAQCFDYVTKDEV 451
LV L+ + L G H G IV+ QW +AQ KD++
Sbjct: 455 LVLLDSENRIYHITLRGLHVRDGKIVNTQWKSASAQICAMAWKDDI 500
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 314 LVCLEDYPYTVSVRLHGKHWCGGAIVSKQWVLTAAQCFDYVTKDEV 451
LV L+ + L G H G IV+ QW +AQ KD++
Sbjct: 566 LVLLDSENRIYHITLRGLHVRDGKIVNTQWKSASAQICAMAWKDDI 611
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,248,784
Number of Sequences: 27780
Number of extensions: 392535
Number of successful extensions: 1278
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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