Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c02
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 43 4e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 41 2e-04
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 40 5e-04
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 38 0.001
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 37 0.003
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 36 0.008
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 31 0.13
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.51
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 29 0.90
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.90
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 28 1.6
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 28 1.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 3.6
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.3
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 6.3
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.4
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 43.2 bits (97), Expect = 4e-05
Identities = 33/113 (29%), Positives = 55/113 (48%)
Frame = +3
Query: 354 SQVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNK 533
SQ+ L+ + +K+ + F +L L LS N+L E+ P + L L+L+ NK
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNK 390
Query: 534 LQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSKNGIYDLI 692
+ F L HL+ L L N + + L+ + +LE LD+ N I D++
Sbjct: 391 ITGCRTFYHISLSHLQILVLSRNHLTSL--SGLENVPSLEKLDIRDNSITDVV 441
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 40.7 bits (91), Expect = 2e-04
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +3
Query: 441 LSLSQNDLVEVTPDLFTNID-YLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKI 617
L LS +L E+ + I + L L +N +++ P K + L+ LN++SN +++
Sbjct: 32 LDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTR-LRYLNIRSNVLREF 90
Query: 618 PVEALQPLVALEDLDLSKNGIYDLILPKDTNALSGLK 728
P E+L L +LE LD+S+N I LP+ AL LK
Sbjct: 91 P-ESLCRLESLEILDISRNKIKQ--LPESFGALMNLK 124
Score = 39.5 bits (88), Expect = 5e-04
Identities = 32/108 (29%), Positives = 56/108 (51%)
Frame = +3
Query: 357 QVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKL 536
++ L +N IK+ P+ T L+ L++ N L E P+ ++ LE LD+S NK+
Sbjct: 53 RIARLALGHNFIKSIGPEILKFT-RLRYLNIRSNVLREF-PESLCRLESLEILDISRNKI 110
Query: 537 QNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSKNGI 680
+ P F L +LK L++ N++ ++P + + LE L + N I
Sbjct: 111 KQL-PESFGALMNLKVLSISKNRLFELPT-YIAHMPNLEILKIENNHI 156
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +3
Query: 426 PTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYN-KLQNFNPFDFKHLKHLKRLNLQSN 602
P+L+ L L N+++ F N+ +L+ L L+ N L + + + + + LNL S
Sbjct: 217 PSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSST 276
Query: 603 QIKKIPVEALQPLVALEDLDLSKNGIYDLILPKDTNALSGLK 728
+ + + L L LD+S+N I D+ L LK
Sbjct: 277 SLADVAELPVHTLHKLTFLDISENNIRDIRSLDHLRTLENLK 318
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = +3
Query: 429 TLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQI 608
T++ L+ +N L +T F+N+ L+ LD+SYN+L++ L HL+ L + SN +
Sbjct: 647 TIRDLNAVENRLSSLTS--FSNLLNLQYLDISYNQLEDLT--GLSSLIHLRELKVDSNHL 702
Query: 609 KKIPVEALQPLVALEDLDLSKNGIYDL 689
+ + +Q L L L N I +L
Sbjct: 703 WSL--DGIQHLDGLLKLSACNNRIKEL 727
Score = 30.7 bits (66), Expect = 0.22
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = +3
Query: 414 FSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQN--FNPFDFKHL-KHLKR 584
F+ P ++RL N +N LD+ L N F D KH+ ++
Sbjct: 812 FNRPPDIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHMFLGVRY 871
Query: 585 LNLQSNQIKKIPVEALQPLVALEDLDLSKNGIYDL 689
L L + Q+K++P + L LDLS N I D+
Sbjct: 872 LELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI 906
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +3
Query: 414 FSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDF-KHLKHLKRLN 590
FS+ L +S+++L + ++ L L++S+N + P DF + LKRL+
Sbjct: 401 FSEKKITANLDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDL-PLDFMERCVKLKRLD 459
Query: 591 LQSNQIKKIPVEALQPLVALEDLDLSKNGIYDL 689
+ SN ++ + + L LE L++S+N IY+L
Sbjct: 460 I-SNNLRSPRGKPITALRQLEVLNMSRNDIYEL 491
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +3
Query: 354 SQVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNK 533
SQ+ETL F +N + + LK L L NDL P + LE +DLSYN
Sbjct: 548 SQLETLNFSHN-LLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNA 606
Query: 534 LQN 542
+ N
Sbjct: 607 ITN 609
Score = 33.9 bits (74), Expect = 0.024
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Frame = +3
Query: 414 FSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNL 593
F + LK L +S N+L ++ + LE L + N+L +F P + K L+ L++
Sbjct: 850 FQNFSDLKHLFVSGNELANLSISSTAQV-LLETLYANGNRLSSF-PKNEALSKSLRFLDI 907
Query: 594 QSNQIKKIPVE-----ALQPLVALEDLDLSKNGIYDLILPKDTN 710
+N ++ + VE +L L LE L+LS N + +DTN
Sbjct: 908 STNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFSEHEDTN 951
Score = 32.7 bits (71), Expect = 0.055
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +3
Query: 444 SLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPV 623
+LS N + ++ F + +EEL L N+L N ++ K LK LNL N + +IP
Sbjct: 789 TLSGNPVSSLSSQEFV-MPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPS 847
Query: 624 EALQPLVALEDLDLSKNGIYDLILPKDTNAL 716
+ Q L+ L +S N + +L + L
Sbjct: 848 KFFQNFSDLKHLFVSGNELANLSISSTAQVL 878
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +3
Query: 333 LGKLPPNSQVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEV 473
LG P +++TL NN I PD P LK LSL+QN L E+
Sbjct: 56 LGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEI 102
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 31.5 bits (68), Expect = 0.13
Identities = 26/85 (30%), Positives = 47/85 (55%)
Frame = +3
Query: 420 DTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQS 599
D P ++++ + DL++ PD ++D +E L +++Q+ + K+L+ L L+
Sbjct: 19 DDPDVQQIDADE-DLLDDVPD---DVDCVE---LIQSRIQSMASLGLERFKNLQSLCLRQ 71
Query: 600 NQIKKIPVEALQPLVALEDLDLSKN 674
NQIKKI E++ L +LDL N
Sbjct: 72 NQIKKI--ESVPE--TLTELDLYDN 92
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.51
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +3
Query: 405 PDPFSDTPTLKRLSLSQNDLVEVTPDLFTNI------DYLEELDLSYNKLQNFNPFDFKH 566
P FS+TPT RL + VE FTN+ D E + L+ + + N + KH
Sbjct: 3438 PVRFSNTPTTLRLMWTLFANVEKPGSTFTNMVSNLITDARELMKLTPETINDDNLSEIKH 3497
Query: 567 LKHLKRLNLQSNQIKKIPVEALQ 635
LK K L L + K + LQ
Sbjct: 3498 LKSRKHL-LLTETFKTLKAFGLQ 3519
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 28.7 bits (61), Expect = 0.90
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +2
Query: 254 SGQNRLASKSERTEDIRFV*RDRTQYTWQITAKFASGNIKIYQQWHQDVLARSI*RHANP 433
SGQ R A SER R D T W + A GN K Q Q+ + + H P
Sbjct: 86 SGQQRAAYYSERYHSFRDKEHDTTLEKWLLGA--YRGNEKFASQHVQEAASMTQLSHLLP 143
Query: 434 QATIVIAKRPSR 469
+ I ++ SR
Sbjct: 144 SSLINLSNGQSR 155
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 28.7 bits (61), Expect = 0.90
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +3
Query: 357 QVETLKFINNGIKTYWPDPFSDTPTL----KRLSLSQNDLVEVTPDLFTNIDYLEELDLS 524
Q E L +NGI+ + ++ + +RLS+ + V+ F N D+ + D+
Sbjct: 88 QYECLVTYHNGIRAIYNTKKNEAKNMYKEIERLSVILGESVDEVN--FVNGDFEDISDIK 145
Query: 525 YNKLQ-NFNPF-DFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSKNGIYDLILP 698
+L N L+ K + ++ ++KK+ ++L +++ DLSKNGI LI+
Sbjct: 146 LEQLSAKLNELHQIYRLRKEKNIEIKE-ELKKLQ-DSLSIKLSMPADDLSKNGIKHLIIY 203
Query: 699 KD 704
K+
Sbjct: 204 KE 205
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +3
Query: 429 TLKRLSLSQNDLVEVTPDLFTNIDYLEEL-DLSY-----NKLQNFNPFDFKHLK 572
T+K +S + L + P + N D++E+L L Y N + N FDF H K
Sbjct: 379 TMKWMSAGRTVLAD--PTFYNNTDHVEQLLSLEYADEIRNNISNERTFDFTHYK 430
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 258 PDRTVPRSCQTPNTICSTLNANSLYPISHCTYNNRTLVSNSIRIQSP 118
PD TVP+ T+ L+ + +YP T+N N + QSP
Sbjct: 401 PDYTVPKDAMVIPTLYGALHDSKVYPEPE-TFNPDRWAPNGLAEQSP 446
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 496 MFVNRSGVTSTRSFCDNDSRLRVGVSLNGSGQYVLMPLL 380
+FVN + T CD + + SL G Y+L P+L
Sbjct: 1284 VFVNLGAMYHTVEICDYQAGAAINASLYPPGCYMLKPVL 1322
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 492 NIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSK 671
N D L EL+ S + + + K+ K LNL + ++ K + + + +LSK
Sbjct: 728 NRDLLSELEKSKSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSK 787
Query: 672 NGIYDLILPKDTNALSGLK 728
+ D + K+ N +S LK
Sbjct: 788 KALNDNLGNKE-NIISDLK 805
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 230 KLRTQYVQH*MRTLYIRYLTARTIIAHLFQIQYGFS 123
KLRT + +RT+ + YL ++ + FQ+ FS
Sbjct: 111 KLRTSRIASKIRTVQVAYLDFTSLESRYFQVHDSFS 146
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -2
Query: 94 LNKNKKLKKYFRSIFLC 44
+++N+K+ KY R++FLC
Sbjct: 408 VSQNRKVSKYDRNVFLC 424
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 355 EFGGNLPSVLSPIPSNEADIFSPFGFGGQAILS-RSDSSAVLS 230
E+GG+LPS P N+ + SP Q LS ++ AVL+
Sbjct: 637 EYGGSLPSSTVPSDYNQPQLVSPRAQADQQGLSYKNVGRAVLN 679
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 177 ISDIESSHLVLNILCSEFDRTAELSDLDKIAWPPNPNGLKISASFE 314
I E L+L+ L + RT+ + + W P NG+ S+SF+
Sbjct: 80 IDQKEDEDLILDTLNAVPARTSHKFGITDLHWFPFDNGIFTSSSFD 125
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 LASKSERTEDIRFV*RDRTQYTWQITAKFASGNIKIYQQWHQDVLARSI*RHANPQATIV 448
L + E D F + R + T +++ S + Q+WH RS +H N I
Sbjct: 385 LDTLDELPVDYEFELKLRKKQTTKVSGTPKSKHAGSTQEWHSHTTPRSTSKHENNLNNIT 444
Query: 449 IAKRPSRGHARPIHK-HRLPGR 511
+ + ++ HK H P +
Sbjct: 445 NSAKNEHIRSQRQHKTHAAPSK 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,703
Number of Sequences: 5004
Number of extensions: 62480
Number of successful extensions: 261
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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