Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4c02
(728 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 46 4e-07
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 27 0.24
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 25 0.55
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 25 0.97
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.9
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 3.9
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 5.2
AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein ... 22 6.8
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 21 9.0
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 21 9.0
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 9.0
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 9.0
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 9.0
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 9.0
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 9.0
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 9.0
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 46.0 bits (104), Expect = 4e-07
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 1/188 (0%)
Frame = +3
Query: 114 ELVTESVLNLKQVCDYCTCSEISDIESSHLVLNILCSEFDRTAELSDLDKIAWPPNPNGL 293
EL +S L L+++ EI + L +N LCS D L+ + N GL
Sbjct: 137 ELAPDSFLGLRELHTL----EIVESNVQALPVNSLCS-LDNLQTLNLTENRLRDINDIGL 191
Query: 294 KISASFEGIGLSTLGKLPPNSQVETLKFINNGIKTYWPD-PFSDTPTLKRLSLSQNDLVE 470
S +G + + + + L N I + P D L+ L L +N +VE
Sbjct: 192 NRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVE 251
Query: 471 VTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVAL 650
+ D T + L + SYN L + F + L+ ++L N ++ +P L L
Sbjct: 252 IAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQL 311
Query: 651 EDLDLSKN 674
L+L+ N
Sbjct: 312 LVLNLAGN 319
Score = 43.6 bits (98), Expect = 2e-06
Identities = 31/120 (25%), Positives = 55/120 (45%)
Frame = +3
Query: 315 GIGLSTLGKLPPNSQVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTN 494
G+G+ + + P E N ++ F ++ L ++ + + + F
Sbjct: 782 GLGVEEIPRRIPMDATEVY-LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNG 840
Query: 495 IDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSKN 674
++ L+ L L N+++ F+F+ L HL+ L LQ+N I I PL +LE L LS N
Sbjct: 841 LNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGN 900
Score = 42.3 bits (95), Expect = 5e-06
Identities = 32/112 (28%), Positives = 51/112 (45%)
Frame = +3
Query: 354 SQVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNK 533
S ++ L N + T PD D LK L L +N + F N+D L L L N
Sbjct: 431 SDLKELDLSGNEL-TSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGND 489
Query: 534 LQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSKNGIYDL 689
+ N + L +L+ LNL N+++ + A + + LE + L N + D+
Sbjct: 490 IGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDI 541
Score = 41.5 bits (93), Expect = 8e-06
Identities = 30/87 (34%), Positives = 40/87 (45%)
Frame = +3
Query: 414 FSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNL 593
F D L+ L L N + + + F + L L+LS NKL+ F L L RL L
Sbjct: 355 FKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTL 414
Query: 594 QSNQIKKIPVEALQPLVALEDLDLSKN 674
N I I A + L++LDLS N
Sbjct: 415 SGNAIASIDPLAFRNCSDLKELDLSGN 441
Score = 40.7 bits (91), Expect = 1e-05
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +3
Query: 414 FSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKL--QNFNPFDFKHLKHLKRL 587
F+ T L+ + L+ N L ++ +FT ++ L L+L+ N+L + F L L L
Sbjct: 281 FASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVL 340
Query: 588 NLQSNQIKKIPVEALQPLVALEDLDLSKNGI 680
NL N + I + L L+ LDL N I
Sbjct: 341 NLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371
Score = 39.1 bits (87), Expect = 4e-05
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +3
Query: 357 QVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKL 536
Q++ L N I D + L+ + S N L + LF + L E+ L+YN L
Sbjct: 238 QLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGL 297
Query: 537 QNFNPFDFKHLKHLKRLNLQSNQI--KKIPVEALQPLVALEDLDLSKN 674
++ F L+ L LNL N++ ++ L+ L L+LS N
Sbjct: 298 RDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYN 345
Score = 27.5 bits (58), Expect = 0.14
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 540 NFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDL 659
+FN ++ L L L++ ++ +IP A QPL+ L+ L
Sbjct: 82 SFNAQSWQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKL 121
Score = 27.1 bits (57), Expect = 0.18
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 465 VEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKI 617
+E+ PD F + L L++ + +Q L +L+ LNL N+++ I
Sbjct: 136 LELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDI 186
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 26.6 bits (56), Expect = 0.24
Identities = 17/71 (23%), Positives = 36/71 (50%)
Frame = +3
Query: 492 NIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSK 671
N DYL+ ++S +N + D K+ NL++ ++K++ + L+ + + +K
Sbjct: 173 NSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKLKELRI-ILEDIKHINTRHNTK 231
Query: 672 NGIYDLILPKD 704
NG+ L+ D
Sbjct: 232 NGMKTLLSETD 242
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 25.4 bits (53), Expect = 0.55
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 528 NKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
N N+N ++ + + K+L N I++IPV P+
Sbjct: 332 NNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPI 369
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 24.6 bits (51), Expect = 0.97
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 504 LEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+ L +YN N+N ++ + + K+L N I++IPV P+
Sbjct: 82 ISSLSNNYN-YSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVPV 126
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 2.9
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +3
Query: 174 EISDIESSHLVLNILCSEFDRTAELSDLDKIAWP---PNPNGLKISASFEGI 320
E S + ++ NI D +L P P PNG+K+ + EG+
Sbjct: 1102 ETSTVTAAAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIKMPSFMEGM 1153
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 22.6 bits (46), Expect = 3.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +1
Query: 319 SDSVHLANYRQIRKW 363
+D +HL Y+ + KW
Sbjct: 182 ADELHLTEYKLVEKW 196
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.2 bits (45), Expect = 5.2
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +3
Query: 423 TPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLS-YNKLQNFNPFDFKHLKHLKRLNLQS 599
TP KR+ L Q+ L P L + E D S Y+ + N +H L +
Sbjct: 198 TPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDEN----RHSSTLDIDHKML 253
Query: 600 NQIKKIPVEALQ 635
IK P++A +
Sbjct: 254 TPIKSEPIDAYE 265
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 256 WTKSLGLQIRTD*RYPLRLKGSDSVHLAN 342
W K G QIRTD +++ S + L+N
Sbjct: 1345 WYKGQGEQIRTDSTRNIQILPSGELMLSN 1373
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 256 WTKSLGLQIRTD*RYPLRLKGSDSVHLAN 342
W K G QIRTD +++ S + L+N
Sbjct: 1341 WYKGQGEQIRTDSTRNIQILPSGELMLSN 1369
>AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein
protein.
Length = 87
Score = 21.8 bits (44), Expect = 6.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 249 SDLDKIAWPPNPNGLKISASFEGIGLSTLGKLPPN 353
S+ + +PP P +S +G S G +PPN
Sbjct: 44 SNRGPVLFPPGPPPNNEDSSGVIVGASGYGFVPPN 78
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = -2
Query: 85 NKKLKKYFRSIFLCTRVTTAFVQYSRWS 2
N+K+ +Y +FL ++ T+ ++ +W+
Sbjct: 70 NEKITRYIIRMFLISQQKTSKLKIYKWN 97
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = -2
Query: 85 NKKLKKYFRSIFLCTRVTTAFVQYSRWS 2
N+K+ +Y +FL ++ T+ ++ +W+
Sbjct: 53 NEKITRYIIRMFLISQQKTSKLKIYKWN 80
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +3
Query: 525 YNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
Y+ N+N ++ + + K N I++IP+ P+
Sbjct: 91 YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +3
Query: 525 YNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
Y+ N+N ++ + + K N I++IP+ P+
Sbjct: 91 YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +3
Query: 525 YNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
Y+ N+N ++ + + K N I++IP+ P+
Sbjct: 91 YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +3
Query: 525 YNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
Y+ N+N ++ + + K N I++IP+ P+
Sbjct: 91 YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 522 SYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+Y+ N+N + + + K+L N I++IPV P+
Sbjct: 90 NYSNYNNYN--NNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 522 SYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+Y+ N+N + + + K+L N I++IPV P+
Sbjct: 90 NYSNYNNYN--NNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 522 SYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+Y+ N+N + + + K+L N I++IPV P+
Sbjct: 90 NYSNYNNYN--NNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 522 SYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+Y+ N+N + + + K+L N I++IPV P+
Sbjct: 90 NYSNYNNYN--NNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 522 SYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+Y+ N+N + + + K+L N I++IPV P+
Sbjct: 90 NYSNYNNYN--NNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 522 SYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPL 641
+Y+ N+N + + + K+L N I++IPV P+
Sbjct: 90 NYSNYNNYN--NNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,890
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 39
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -