Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b23
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201...    33   0.21 
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319...    29   4.5  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   6.0  
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130...    28   7.9  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    28   7.9  
03_02_0900 - 12262149-12262565,12262924-12263061,12263387-122634...    28   7.9  
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717...    28   7.9  

>02_01_0301 +
           2011707-2015423,2016982-2017182,2017670-2017786,
           2018030-2018122
          Length = 1375

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 419 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKR 598
           +  N   + V    KLD    + KH T++I    TE++P IQ  L  LQ   K ++ +KR
Sbjct: 243 VQNNFHVIWVCMSHKLD----IRKHTTEVIESLATEETPKIQN-LDTLQRKLKNLLLEKR 297

Query: 599 D 601
           +
Sbjct: 298 E 298


>03_05_1161 -
           30831043-30831151,30831641-30831759,30831880-30831906,
           30832117-30832158,30832293-30832392,30832481-30832545,
           30832619-30832694,30832878-30832939,30833248-30833253,
           30834704-30834782,30834890-30834957
          Length = 250

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +2

Query: 398 MAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHK 577
           M E++E +  N+ EL  L  +  + +K +    ++++   I E    +QR  K+LQE +K
Sbjct: 122 MGEDLESL--NLKELQQLEQQLENSLKHIRSRKSQLMLESINE----LQRKEKSLQEENK 175

Query: 578 RIIFQKRDSVEVEYIFTTEKKSS 646
            +  QK    +V++  T  + SS
Sbjct: 176 LVEKQKVQKQQVQWDQTQPQTSS 198


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 158  PYCFFLFTESLTNLIFGSLLNYFKIILDILE 250
            P C   F+ SL NL+  S ++ FK +LD +E
Sbjct: 1106 PLCHMEFSSSLANLVLSS-VDRFKTMLDFIE 1135


>07_01_0184 -
           1304328-1304951,1305328-1305441,1305549-1305839,
           1305930-1306238,1306326-1307048
          Length = 686

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 120 RCNYIFIFFFLKNLIVFFYS 179
           + N IF+FF L+ LI+ FYS
Sbjct: 485 KANLIFLFFLLRKLILPFYS 504


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 120 RCNYIFIFFFLKNLIVFFYS 179
           + N IF+FF L+ LI+ FYS
Sbjct: 500 KANLIFLFFLLRKLILPFYS 519


>03_02_0900 -
           12262149-12262565,12262924-12263061,12263387-12263446,
           12263557-12263619,12264181-12264243,12264420-12264482,
           12265076-12265153,12265673-12266080
          Length = 429

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 500 KIINHPITEQSPSIQRYLKNLQETHKRIIFQ 592
           ++IN  +T Q  S++  L  L+ET+K ++ Q
Sbjct: 215 EVINDALTHQETSLKERLSGLEETNKVLLVQ 245


>02_02_0581 +
           11770511-11770527,11770754-11771612,11771652-11771749,
           11772903-11773631,11775159-11775231,11775698-11776066,
           11777009-11777038
          Length = 724

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +2

Query: 404 ENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRI 583
           EN +D  K I E+ VL   K DD+ K  KH   ++N+P    + +I   L+ L  TH  +
Sbjct: 97  ENYQDAHKIIVEI-VLQQHK-DDIPKDVKHLLNLMNNP----NKAISMELEYLICTHASL 150

Query: 584 I 586
           +
Sbjct: 151 V 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,386,975
Number of Sequences: 37544
Number of extensions: 268457
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)