Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b21
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...   109   3e-25
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    69   7e-13
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    66   5e-12
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    27   3.6  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    26   4.7  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   8.2  

>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score =  109 bits (263), Expect = 3e-25
 Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
 Frame = +1

Query: 142 LKWGIAGVGMIAHDFLTALDTLPPE---QHRVVAIAGKDVD-RVQRLATLHKINT---AY 300
           + WG  G G IA  F   L  +P     QH +VA+A +D + R    A  H       AY
Sbjct: 11  IHWGFLGAGSIAAVFAKDLVGVPERHKVQHEIVAVATRDSEHRASSFAKNHCAPCKPKAY 70

Query: 301 EGYEQLARDASIDIVFVSVLNLQHYEITKLMLENDKHVLCEKPMGMTYKQTKSLVDLARE 480
             YE+L +D  +DIV++S  + QHYE+ KL L NDK VLCEKP+ + Y +   LV+LAR 
Sbjct: 71  GSYEELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELVELARA 130

Query: 481 KGLFLLEGMWSRFFPAYDA 537
           + LF  EG W RF+P   A
Sbjct: 131 RNLFFAEGFWIRFYPIVKA 149


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
 Frame = +1

Query: 142 LKWGIAGVGMIAHDFLTALDTLPPEQHRVVAIAGKDVDRVQRLATLHKINT-AYEGYEQL 318
           +K  + G GM A  F        P    V A   +     +  A     N   Y   ++L
Sbjct: 4   IKTAVLGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTESKARAAFPNVKVYTKLDEL 63

Query: 319 ARDASIDIVFVSVLNLQHYEITKLMLENDKHVLCEKPMGMTYKQTKSLVDLAREKGLFLL 498
             D++I++V +S+    HYE+    L   KHVLCEKP   TY + K L DLA+ K L L 
Sbjct: 64  LADSNIELVVISLPPNVHYEVVSQALNAGKHVLCEKPFTPTYGEAKELFDLAKSKNLMLT 123

Query: 499 EGMWSRFFPAYDALEKHITTGGLGEV 576
                RF   +   ++ I  G LGEV
Sbjct: 124 VYQNRRFDGDFLTAKECIENGRLGEV 149


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
 Frame = +1

Query: 142 LKWGIAGVGMIAHDF-LTALDTLPPEQHRVVAIAGKDVDRVQRLATLHKINTAYEGYEQL 318
           +K  + G G+ A  F    L+ LP +      +  +      +  + +     Y   ++L
Sbjct: 4   IKTAVLGTGVSAFVFHFPFLEALPSKFEIYACLERRATVTQSKARSAYPNILVYTNLDEL 63

Query: 319 ARDASIDIVFVSVLNLQHYEITKLMLENDKHVLCEKPMGMTYKQTKSLVDLAREKGLFLL 498
             D +I++V VS+    H EI K  L   KHV+CEKP   TY++ K L +LA  K L L 
Sbjct: 64  LADVNIELVVVSLPPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKELYELAESKSLLLA 123

Query: 499 EGMWSRFFPAYDALEKHITTGGLGEVYHINVQF 597
                R+   +   +K I +G LG+V      F
Sbjct: 124 IYQNRRWDGDFLTAKKIIESGRLGQVVEFESHF 156


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +1

Query: 295 AYEGYEQLARDASIDIVFVSVLNLQHYEITKLMLENDKHVLCEKPMGMTYKQTKSLVDLA 474
           A E YE L  +   ++    + ++   E +  M+E D+H   +  + ++ K+   LV++ 
Sbjct: 48  ALEKYEMLFGERRKEVELDYMSHIAEEETSLSMIEYDRHFALQTDVKLSKKRKSKLVEMT 107

Query: 475 REKGL 489
             KGL
Sbjct: 108 -PKGL 111


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 655 PHHHRGPSSDSF 620
           P++HR PSSDSF
Sbjct: 128 PYYHRSPSSDSF 139


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 289 NTAYEGYEQLARDASIDIVFVSVLNLQHYEITKLMLEN-DKHVLCEKPMGMTYKQTKSLV 465
           +T +E    +A D   + ++ S   L + E+  L   N D H++    + + Y QT  L+
Sbjct: 107 DTNFEARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQLI 166

Query: 466 D 468
           D
Sbjct: 167 D 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,768
Number of Sequences: 5004
Number of extensions: 59923
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)