Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b21
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    50   2e-06
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841...    30   2.1  
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325...    28   6.5  
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835           28   6.5  
12_02_0160 + 14585559-14586230                                         28   8.6  

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
 Frame = +1

Query: 298 YEGYEQLARDASIDIVFVSVLNLQHYEITKLMLENDK--HVLCEKPMGMTYKQTKSLVDL 471
           + G+ +L      D V VS  N+ HY+I   ++ + K  H+L EKP+  T +  + +V+ 
Sbjct: 119 FSGHGELLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEA 178

Query: 472 AREKGLFLLE-GMWSRFFPAYDALEKHITTGGLGEVYHINVQ 594
           A+++   L++ G+  R+ P    L   + +G LG+V  + ++
Sbjct: 179 AKQRSDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIR 220


>02_04_0215 -
           20983210-20983293,20983440-20983512,20984072-20984159,
           20984232-20984388,20984472-20984575,20985045-20985119,
           20985144-20985213
          Length = 216

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 257 RSTSLPAIATTLCCSGGKVSNAVRKSWAIIPTPAIPHFNCISIYDCFDS 111
           R T++  I   LCC  GK  +A+  S + +    +PH N +S  D  ++
Sbjct: 83  RLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIEN 131


>09_06_0172 +
           21329904-21331512,21331595-21331740,21332333-21332556,
           21333689-21334448
          Length = 912

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 154 IAGVGMIAHDFLTALDTLPP 213
           +A VG + HDFL  + +LPP
Sbjct: 38  LAAVGAVLHDFLRGVQSLPP 57


>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
          Length = 1091

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 424 KPM-GMTYKQTKSLVDLAREKGLFLLEGMWSRFFPAYDALEKHITTGGLGEVYHINVQFG 600
           KP+ G+   Q + +  L R+K L +L+ +W      +++       G  G +  +  +F 
Sbjct: 305 KPLCGLDALQVELMEQLERQKFLLVLDDIWQEAIDEWESFYTPFKNGPKGSMILVTTRFT 364

Query: 601 VQINDIERNLMK 636
             ++ +  N  K
Sbjct: 365 TVVDRVATNNCK 376


>12_02_0160 + 14585559-14586230
          Length = 223

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 636 GPRWWCGFRPRSVHVAANKLHIQGNR 713
           G  WWCG R R V V      ++G R
Sbjct: 18  GAWWWCGGRRRRVEVVRRPALLRGRR 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,541,108
Number of Sequences: 37544
Number of extensions: 381573
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)