Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b21
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine rece...    29   4.4  
AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set (trithora...    28   5.8  
AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein35 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 295 AYEGYEQLARDASIDIVFVSVLNLQHYEITKLMLENDKHVL 417
           +YE  E      S+ IV+  ++NL +  I+K+MLE + + L
Sbjct: 27  SYESGESHPIIGSLQIVYGVIVNLLYLPISKIMLEKENYKL 67


>AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 27
           protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 657 NRTTTEVLHQIPFNVVNLNPKL 592
           N   T + + +PFNV N  PKL
Sbjct: 238 NAMETPIFYNVPFNVANFTPKL 259


>AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical
           protein ZK993.2 protein.
          Length = 903

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 262 QRLATLHKINTAYEGYEQLARDASIDIVFVSVLN-LQHYEITKLMLENDKHVL 417
           +R    H I++ Y+   QL +    ++++    N +  YEIT   L+NDK ++
Sbjct: 380 RRREVFHLISSRYKTISQLEQQLG-NVIYTPTANAIWAYEITMKSLQNDKRLI 431


>AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical
           protein B0511.8 protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 194 AVRKSWAIIPTPAIPHFNCISIY 126
           A RK+W I PTPA  HF+ +  Y
Sbjct: 135 ATRKAWGIPPTPA--HFDTLDYY 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,903
Number of Sequences: 27780
Number of extensions: 338544
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)