Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b21
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   8.9  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   8.9  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   8.9  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   8.9  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP SF RF+
Sbjct: 365 FVSIQEQIPRFRYIGPPTSFPRFI 388


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP SF RF+
Sbjct: 365 FVSIQEQIPRFRYIGPPTSFPRFI 388


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP SF RF+
Sbjct: 365 FVSIQEQIPRFRYIGPPTSFPRFI 388


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP SF RF+
Sbjct: 365 FVSIQEQIPRLRYIGPPTSFPRFI 388


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP SF RF+
Sbjct: 354 FVSIQEQIPRFRYIGPPTSFPRFI 377


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/20 (35%), Positives = 16/20 (80%), Gaps = 3/20 (15%)
 Frame = -3

Query: 264 LNAIYIFAGYCN---NPVLF 214
           L++++++ GYCN   NP+++
Sbjct: 408 LSSLFLWLGYCNSLLNPIIY 427


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP  F RF+
Sbjct: 132 FVSMQEQIPRFRYIGPPTPFPRFI 155


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP  F RF+
Sbjct: 132 FVSMQEQIPRFRYIGPPTPFPRFI 155


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP  F RF+
Sbjct: 132 FVSMQEQIPRFRYIGPPTPFPRFI 155


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 692 FISCNMYTPRSKTAPPPRSFIRFL 621
           F+S     PR +   PP  F RF+
Sbjct: 132 FVSMQEQIPRFRYIGPPTPFPRFI 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,888
Number of Sequences: 438
Number of extensions: 4687
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)