Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b19
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 37 0.007
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.15
02_04_0382 - 22501041-22501279,22501717-22501810 32 0.20
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.1
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 30 1.1
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.4
01_01_0082 + 625198-625719 29 2.5
03_02_0390 + 8056006-8057502 28 4.4
08_02_1289 - 25923916-25924586,25925148-25926630 27 5.8
04_03_0904 + 20717005-20718087 27 5.8
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 5.8
09_02_0417 - 8915604-8916779,8916863-8917270 27 7.6
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 167 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPG 337
QP Y P + P V PP Y P +G P N + Y +PP GRP P P G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445
Query: 338 ARG 346
A G
Sbjct: 446 AGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 188 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 337
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 164 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 331
A+ T +G P ++ + PP D P+ + Y+P + YY DPP Y+ P P
Sbjct: 28 AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86
Query: 332 PGARGG 349
P GG
Sbjct: 87 PYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 206 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 322
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +2
Query: 149 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDPPQGRPYF 316
P P+ QP G Y P Y P ++ P Y P G Y PQG+PY
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286
Query: 317 KPTPF 331
P P+
Sbjct: 287 PPQPY 291
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Frame = +2
Query: 122 NADSVVINDPDPFFAQ------PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 283
NA++ P P A P++ NG P+ + PP P+ NGA
Sbjct: 616 NANANAAPGPPPMMANAAPVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAA 675
Query: 284 YVDPPQGRPYFKPTPFPG 337
PP G P P PG
Sbjct: 676 AAAPPGGNPAPPAGPQPG 693
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 194 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 334
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 170 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARG 346
P G GY P + NP YNP +G+ N Y+ PP G Y + F P A
Sbjct: 97 PYGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAA 151
Query: 347 G 349
G
Sbjct: 152 G 152
>03_02_0390 + 8056006-8057502
Length = 498
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 119 ENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 298
++ D V + F A+PT N + + Y+ + +GNG + G + +
Sbjct: 289 DDGDEVNAKEQFEFVAEPTTANSKDCVGTHEYLAPELVSGSGHGNGVDWWAFGVFLYELV 348
Query: 299 QGRPYFK 319
GR FK
Sbjct: 349 YGRTPFK 355
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 460 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 311
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 221 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 334
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 274 RCILRGPSPR-PTLLQAYPFPWCSRW 348
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 209 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 328
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,986
Number of Sequences: 37544
Number of extensions: 301213
Number of successful extensions: 761
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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