Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b19
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    32   0.24 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    30   0.96 
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    30   0.96 
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    30   0.96 
U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 146 DPDPFFAQPT-VGNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYF 316
           DP+   +QPT +G G  P    P  V PP  Y   P  +G    DNGA     P G PY 
Sbjct: 345 DPNLPPSQPTPIGGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYP 401

Query: 317 KPTPFPGARG 346
              P P   G
Sbjct: 402 SDVPAPYPSG 411


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 125 ADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 265
           + SV+   P     QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 80  SQSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 125 ADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 265
           + SV+   P     QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 51  SQSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMP 90


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 125 ADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 265
           + SV+   P     QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 80  SQSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical
           protein F56C9.8 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
 Frame = +2

Query: 8   LIFSPVITRDHIKMKFFMIFVLALLAMANAQDPVKVVENADSVVINDPDPFFA--QPTVG 181
           ++F+ VI    +   F  +   A++    + D  ++    +S   N P   +   QP   
Sbjct: 22  VVFAIVIGGVLLLAAFIYVIYAAVVRSMRSDDKQRLHSGRNSAQWNQPQQQYREQQPASD 81

Query: 182 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQ 301
             Y P   + Y  N P     N   + P+ +   Y   PQ
Sbjct: 82  FPYNPAPTQNYDYNAPIRTPVNPTSFTPVPSVTQYSTQPQ 121


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 191 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 277
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +2

Query: 170 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFPG 337
           P  G  + P  N   + N P  +     GY   P         PP+G  Y++P   P+  
Sbjct: 36  PQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYKP 93

Query: 338 ARGGK 352
            +GGK
Sbjct: 94  GKGGK 98


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 188 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 328
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 222 ILPKITTLMETATNLSTTVHITWTLPKAD 308
           I+   TT +++ T+LS   + TW LPK D
Sbjct: 19  IVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 251  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 340
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.4 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 147 SLITTESAFSTTLTGS*ALAIASRARTKIMKNF-IFI 40
           S I  ES     +T    LAI SR +TK++KN  +FI
Sbjct: 110 SFIHVESIKLNCITIDKCLAILSRCKTKVLKNIDLFI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,672,816
Number of Sequences: 27780
Number of extensions: 247644
Number of successful extensions: 700
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)