Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b18
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 30 0.40
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 29 0.53
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 27 2.1
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 2.8
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 3.7
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 4.9
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 4.9
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 26 4.9
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 6.5
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 6.5
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 6.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 6.5
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 6.5
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 35.9 bits (79), Expect = 0.006
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 460 KSKYLPKLCSGEHIGALA---MSEPGSGSDVVSM-KLRAEKKGDYYVLNGNKFWITN--G 621
K + KL SGE + A M + + V +LR E ++ +NGNK ++N
Sbjct: 167 KDYHRQKLLSGEILDAEEDEPMPNDANPTHVEEQERLRKETIAAFHDVNGNKDAVSNESD 226
Query: 622 PDADVLVVYAKTNWSTSKQQHGISAFLIE 708
D D LV KT +++HG FL+E
Sbjct: 227 EDGDFLVKKEKTKKQLEEEEHGYERFLLE 255
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 382 GGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSM 552
GG A+ H L ++ TE+ K PK+ E A+ +S+P +GS +V +
Sbjct: 462 GGSAVHLTTHDKLA--KLVEALTEQYYKKQFPKITQSELNAAVVVSKPAAGSCIVQL 516
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 154 EEQQQLRKMVFDFAQKELAPKAAEIDKENNFK-ELRPFWKKLGD 282
EE L + D ++EL E+D+ENN+K LR + +L D
Sbjct: 72 EEDPDLEAYLSDLEREELEHSLEELDEENNYKLHLRYSFSQLQD 115
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 80 GKPRIKPVIDASRIIPLTIMCLDSPKNNNSSEKWYSTLLRR--NWRQKQLKSTKKTILKN 253
G P ++ + SRI+ L+ C N+ ++ +LR + RQ+ LK +K
Sbjct: 213 GSPEVQAAVYTSRILALSDHC-----KNHKKDQTGKRMLRYYVHQRQRMLKYLRKVNFDR 267
Query: 254 *GHFGRNLEISDC*VLPQV 310
H +NL ++D VL +V
Sbjct: 268 YVHCIKNLGLTDELVLREV 286
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 557 NFIDTTSLPDPGSDIASAPICSP 489
+F T+L DPG +IAS+P+ P
Sbjct: 733 SFQSPTALGDPGDNIASSPLILP 755
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 258 P*FFKIVFFVDFSCFWRQFLLSKVEY 181
P FF + F DFS F Q LL + EY
Sbjct: 200 PDFFVVDFNEDFSAFHGQTLLDQAEY 225
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 636 NICVWSISNPKLISVQHIIIAFLLCS*LH 550
N+ V+S S+P L+ + II LC +H
Sbjct: 20 NVVVYSASDPLLLFIVQAIIIIALCRLIH 48
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 739 FELLKTQDNLFQLKKLKSHVVVYSSTNLSWRIPLKH 632
+++LK +D + + HVV+Y ST IP+ H
Sbjct: 528 YKVLKNKDKISKKIHKWDHVVLYGSTANGLTIPIVH 563
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 478 KLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLN 594
K+ +G IGAL++ PG S+V ++R Y + +
Sbjct: 117 KILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFS 155
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 482 YVQESISEHWQCPNQGQAVTWCL 550
YV E ++CP +G+ V W +
Sbjct: 57 YVDREFVEQFECPVEGELVEWAV 79
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +1
Query: 529 SGSDVVSMKLRAEKKGDYYVLNGNKFWI-------TNGPDADVLVVYAKTNWSTSKQQHG 687
S +++++ K +E+ G Y+++NG + I N P A + +A N TS Q+G
Sbjct: 208 SPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFA--NRGTSYSQYG 265
Query: 688 ISAFLIEKD 714
+S + D
Sbjct: 266 LSIRCVRPD 274
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +1
Query: 172 RKMVFDFAQKELAPKAAEIDKENNFKELRPFWKKLGDLGLLGITASSDYGGTGGKYSDHC 351
+++VF A A D E+ + R LG LGI S+Y KY+
Sbjct: 6 KQLVFFLVMTLTAADKAAFDAESMLEAPRRSAVVSNPLGNLGIFIESNYSFADHKYNSGI 65
Query: 352 VIMEELSR 375
++ E +R
Sbjct: 66 YLLNESTR 73
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 167 SSEKWYSTLLRRNWRQKQLKSTKKTILKN*GH 262
++E+W L R+N R+K+ K K+ L N H
Sbjct: 75 TAEEWKMDLHRKNERKKREKERKEVELSNRKH 106
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 153 RRTTTAQKNGIRLCSEGIGAKSS*NRQRKQF*RTKAILEETWRSR 287
R T +AQ + ++ C+E I + + +Q+ K+ L+ W+ +
Sbjct: 403 RTTYSAQSSSVKNCNERIPSAKALKKQKHLVPENKSKLQYVWQKK 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,144
Number of Sequences: 5004
Number of extensions: 71323
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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